RNA–Protein interactions for RNA: ENST00000542996.6

CALU-206, Transcript of calumenin, humanhuman

TSL 1 (best) BASIC

Gene CALU, Length 4,225 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALU-206ENST00000542996 NISCHQ9Y2I1 1504 aa22.81■■□□□ 1.24
CALU-206ENST00000542996 SHROOM4Q9ULL8 1493 aa19.66■□□□□ 0.74
CALU-206ENST00000542996 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.69
CALU-206ENST00000542996 MYO15BQ96JP2 1530 aa19.15■□□□□ 0.66
CALU-206ENST00000542996 CCDC180Q9P1Z9 1646 aa19.15■□□□□ 0.66
CALU-206ENST00000542996 SUPT5HO00267 1087 aaKnown RBP19.04■□□□□ 0.64
CALU-206ENST00000542996 CHIC1Q5VXU3 224 aa18.67■□□□□ 0.58
CALU-206ENST00000542996 DCAF8L2P0C7V8 631 aa18.64■□□□□ 0.57
CALU-206ENST00000542996 DCAF1Q9Y4B6 1507 aa18.48■□□□□ 0.55
CALU-206ENST00000542996 LOC105371045A0A1W2PR82 267 aa18.37■□□□□ 0.53
CALU-206ENST00000542996 SCRIBQ14160 1630 aa18.27■□□□□ 0.52
CALU-206ENST00000542996 ABCC9O60706 1549 aa18.24■□□□□ 0.51
CALU-206ENST00000542996 RSF1Q96T23 1441 aaPredicted RBP18.17■□□□□ 0.5
CALU-206ENST00000542996 RB1CC1Q8TDY2 1594 aa18.16■□□□□ 0.5
CALU-206ENST00000542996 PPARGC1BQ86YN6 1023 aaKnown RBP18.16■□□□□ 0.5
CALU-206ENST00000542996 CECR2Q9BXF3 1484 aa18.14■□□□□ 0.49
CALU-206ENST00000542996 PCGF6Q9BYE7 350 aa18.01■□□□□ 0.47
CALU-206ENST00000542996 MROH2BQ7Z745 1585 aa17.98■□□□□ 0.47
CALU-206ENST00000542996 HRCP23327 699 aa17.95■□□□□ 0.46
CALU-206ENST00000542996 WIZO95785 1651 aa17.94■□□□□ 0.46
CALU-206ENST00000542996 EIF4G1Q04637 1599 aaKnown RBP17.83■□□□□ 0.45
CALU-206ENST00000542996 UNC13AQ9UPW8 1703 aa17.82■□□□□ 0.44
CALU-206ENST00000542996 EHMT2Q96KQ7 1210 aa17.68■□□□□ 0.42
CALU-206ENST00000542996 FAM9AQ8IZU1 332 aaPredicted RBP17.63■□□□□ 0.41
CALU-206ENST00000542996 NACADO15069 1562 aa17.59■□□□□ 0.41
CALU-206ENST00000542996 ABCC8Q09428 1581 aa17.56■□□□□ 0.4
CALU-206ENST00000542996 BAZ1AQ9NRL2 1556 aaPredicted RBP17.5■□□□□ 0.39
CALU-206ENST00000542996 BICRAQ9NZM4 1560 aa17.48■□□□□ 0.39
CALU-206ENST00000542996 RUSC2Q8N2Y8 1516 aa17.47■□□□□ 0.39
CALU-206ENST00000542996 CCDC88BA6NC98 1476 aa17.46■□□□□ 0.39
CALU-206ENST00000542996 TRIM41Q8WV44 630 aa17.45■□□□□ 0.38
CALU-206ENST00000542996 SMARCA2P51531 1590 aa17.4■□□□□ 0.38
CALU-206ENST00000542996 SMARCA4P51532 1647 aa17.38■□□□□ 0.37
CALU-206ENST00000542996 TRIM26Q12899 539 aaPredicted RBP17.34■□□□□ 0.37
CALU-206ENST00000542996 SOGA1O94964 1423 aa17.33■□□□□ 0.37
CALU-206ENST00000542996 PABPN1Q86U42 306 aaKnown RBP eCLIP17.27■□□□□ 0.36
CALU-206ENST00000542996 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
CALU-206ENST00000542996 SYNJ1O43426 1573 aa17.13■□□□□ 0.33
CALU-206ENST00000542996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.04■□□□□ 0.32
CALU-206ENST00000542996 PEG3Q9GZU2 1588 aa17.03■□□□□ 0.32
CALU-206ENST00000542996 TTBK1Q5TCY1 1321 aaPredicted RBP17.03■□□□□ 0.32
CALU-206ENST00000542996 CEP162Q5TB80 1403 aa16.95■□□□□ 0.3
CALU-206ENST00000542996 ATAD2BQ9ULI0 1458 aa16.9■□□□□ 0.3
CALU-206ENST00000542996 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
CALU-206ENST00000542996 WRNQ14191 1432 aaPredicted RBP eCLIP16.88■□□□□ 0.29
CALU-206ENST00000542996 RAPGEF2Q9Y4G8 1499 aa16.82■□□□□ 0.28
CALU-206ENST00000542996 TNIKQ9UKE5 1360 aa16.77■□□□□ 0.28
CALU-206ENST00000542996 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
CALU-206ENST00000542996 CUX1P39880 1505 aa16.67■□□□□ 0.26
CALU-206ENST00000542996 KIF21BO75037 1637 aa16.66■□□□□ 0.26
CALU-206ENST00000542996 TOP2BQ02880 1626 aa16.65■□□□□ 0.26
CALU-206ENST00000542996 CLIP1P30622 1438 aa16.65■□□□□ 0.26
CALU-206ENST00000542996 BAZ1BQ9UIG0 1483 aaKnown RBP16.62■□□□□ 0.25
CALU-206ENST00000542996 BIVM-ERCC5R4GMW8 1640 aa16.62■□□□□ 0.25
CALU-206ENST00000542996 NEUROD1Q13562 356 aa16.61■□□□□ 0.25
CALU-206ENST00000542996 GOLGA3Q08378 1498 aa16.58■□□□□ 0.25
CALU-206ENST00000542996 ARAP1Q96P48 1450 aa16.58■□□□□ 0.25
CALU-206ENST00000542996 KANK4Q5T7N3 995 aaPredicted RBP16.58■□□□□ 0.24
CALU-206ENST00000542996 DNAJC5BQ9UF47 199 aa16.57■□□□□ 0.24
CALU-206ENST00000542996 RANGAP1P46060 587 aaPredicted RBP16.55■□□□□ 0.24
CALU-206ENST00000542996 PRXQ9BXM0 1461 aa16.54■□□□□ 0.24
CALU-206ENST00000542996 UBTFP17480 764 aaKnown RBP16.53■□□□□ 0.24
CALU-206ENST00000542996 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
CALU-206ENST00000542996 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
CALU-206ENST00000542996 VPS8Q8N3P4 1428 aa16.45■□□□□ 0.22
CALU-206ENST00000542996 EEA1Q15075 1411 aa16.44■□□□□ 0.22
CALU-206ENST00000542996 NCAPD3P42695 1498 aa16.44■□□□□ 0.22
CALU-206ENST00000542996 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
CALU-206ENST00000542996 ZEB1P37275 1124 aaPredicted RBP16.42■□□□□ 0.22
CALU-206ENST00000542996 CFTRP13569 1480 aa16.4■□□□□ 0.22
CALU-206ENST00000542996 ARHGAP35Q9NRY4 1499 aa16.38■□□□□ 0.21
CALU-206ENST00000542996 HMGXB3Q12766 1538 aa16.38■□□□□ 0.21
CALU-206ENST00000542996 DIEXFQ68CQ4 756 aaKnown RBP16.33■□□□□ 0.21
CALU-206ENST00000542996 MIER1Q8N108 512 aa16.32■□□□□ 0.2
CALU-206ENST00000542996 LRRIQ1Q96JM4 1722 aa16.31■□□□□ 0.2
CALU-206ENST00000542996 NESP48681 1621 aa16.3■□□□□ 0.2
CALU-206ENST00000542996 IGF1RP08069 1367 aa16.28■□□□□ 0.2
CALU-206ENST00000542996 DHX57Q6P158 1386 aaKnown RBP16.28■□□□□ 0.2
CALU-206ENST00000542996 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
CALU-206ENST00000542996 ERICH3Q5RHP9 1530 aa16.28■□□□□ 0.2
CALU-206ENST00000542996 ACIN1Q9UKV3 1341 aaKnown RBP16.27■□□□□ 0.2
CALU-206ENST00000542996 MAPKBP1O60336 1514 aa16.23■□□□□ 0.19
CALU-206ENST00000542996 KCNH8Q96L42 1107 aa16.22■□□□□ 0.19
CALU-206ENST00000542996 CC2D2AQ9P2K1 1620 aa16.21■□□□□ 0.19
CALU-206ENST00000542996 RAD54L2Q9Y4B4 1467 aa16.2■□□□□ 0.18
CALU-206ENST00000542996 GTF3C3Q9Y5Q9 886 aa16.18■□□□□ 0.18
CALU-206ENST00000542996 FGD5Q6ZNL6 1462 aa16.18■□□□□ 0.18
CALU-206ENST00000542996 RRBP1Q9P2E9 1410 aaKnown RBP16.17■□□□□ 0.18
CALU-206ENST00000542996 ZNF316A6NFI3 1004 aaPredicted RBP16.15■□□□□ 0.18
CALU-206ENST00000542996 PHLDB1Q86UU1 1377 aa16.14■□□□□ 0.17
CALU-206ENST00000542996 CUX2O14529 1486 aa16.12■□□□□ 0.17
CALU-206ENST00000542996 PCF11O94913 1555 aaKnown RBP16.08■□□□□ 0.17
CALU-206ENST00000542996 CADPSQ9ULU8 1353 aa16.07■□□□□ 0.16
CALU-206ENST00000542996 PTPRKQ15262 1439 aa16.07■□□□□ 0.16
CALU-206ENST00000542996 TIAM1Q13009 1591 aa16.06■□□□□ 0.16
CALU-206ENST00000542996 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
CALU-206ENST00000542996 YTHDC1Q96MU7 727 aaKnown RBP16.06■□□□□ 0.16
CALU-206ENST00000542996 WDR97A6NE52 1622 aa16.05■□□□□ 0.16
CALU-206ENST00000542996 P3H3Q8IVL6 736 aa16.04■□□□□ 0.16
CALU-206ENST00000542996 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms