Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.022e-6■■■■□ 20.7
SUB1P53999 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.132e-6■■■■□ 20.7
SUB1P53999 EWSR1-221ENST00000610553 2300 ntTSL 213.73□□□□□ -0.212e-6■■■■□ 20.7
SUB1P53999 GPX4-202ENST00000585362 859 ntTSL 219.66■□□□□ 0.744e-6■■■■□ 20.7
SUB1P53999 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.19■□□□□ 0.344e-6■■■■□ 20.7
SUB1P53999 GPX4-208ENST00000592940 1184 ntTSL 516.94■□□□□ 0.34e-6■■■■□ 20.7
SUB1P53999 GPX4-207ENST00000589115 812 ntTSL 2 BASIC14.3□□□□□ -0.124e-6■■■■□ 20.7
SUB1P53999 GPX4-209ENST00000593032 583 ntTSL 314.22□□□□□ -0.134e-6■■■■□ 20.7
SUB1P53999 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.244e-6■■■■□ 20.7
SUB1P53999 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC13.22□□□□□ -0.294e-6■■■■□ 20.7
SUB1P53999 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.354e-6■■■■□ 20.7
SUB1P53999 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.03□□□□□ -0.484e-6■■■■□ 20.7
SUB1P53999 GPX4-203ENST00000585480 501 ntTSL 211.2□□□□□ -0.624e-6■■■■□ 20.7
SUB1P53999 GPX4-204ENST00000587648 536 ntTSL 26.96□□□□□ -1.34e-6■■■■□ 20.7
SUB1P53999 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.53□□□□□ -0.565e-7■■■■□ 20.7
SUB1P53999 USO1-204ENST00000514213 4034 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.975e-7■■■■□ 20.7
SUB1P53999 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.32e-6■■■■□ 20.7
SUB1P53999 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.79■□□□□ 0.122e-6■■■■□ 20.7
SUB1P53999 USP48-203ENST00000374732 3037 ntTSL 2 BASIC6.35□□□□□ -1.392e-6■■■■□ 20.7
SUB1P53999 PSMD7-203ENST00000566015 537 ntTSL 213.95□□□□□ -0.186e-8■■■■□ 20.7
SUB1P53999 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.05□□□□□ -0.486e-8■■■■□ 20.7
SUB1P53999 PSMD7-205ENST00000568615 931 ntTSL 2 BASIC9.74□□□□□ -0.856e-8■■■■□ 20.7
SUB1P53999 MTA1-220ENST00000552286 1943 ntTSL 215.72■□□□□ 0.114e-6■■■■□ 20.7
SUB1P53999 MTA1-206ENST00000434050 2050 ntTSL 1 (best)14.62□□□□□ -0.074e-6■■■■□ 20.7
SUB1P53999 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.1□□□□□ -0.154e-6■■■■□ 20.7
SUB1P53999 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.02□□□□□ -0.174e-6■■■■□ 20.7
SUB1P53999 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.49□□□□□ -0.414e-6■■■■□ 20.7
SUB1P53999 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.524e-6■■■■□ 20.7
SUB1P53999 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.64■□□□□ 0.252e-6■■■■□ 20.7
SUB1P53999 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.112e-6■■■■□ 20.7
SUB1P53999 SNAP23-220ENST00000568841 632 ntTSL 35.44□□□□□ -1.542e-6■■■■□ 20.7
SUB1P53999 SNAP23-208ENST00000563830 570 ntTSL 53.35□□□□□ -1.872e-6■■■■□ 20.7
SUB1P53999 SNAP23-209ENST00000563873 368 ntTSL 33.33□□□□□ -1.882e-6■■■■□ 20.7
SUB1P53999 IQGAP1-218ENST00000633485 5863 ntTSL 56.71□□□□□ -1.348e-15■■■■□ 20.6
SUB1P53999 NDUFS3-211ENST00000533507 1769 ntTSL 220.87■□□□□ 0.933e-6■■■■□ 20.6
SUB1P53999 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.173e-6■■■■□ 20.6
SUB1P53999 NDUFS3-204ENST00000525378 779 ntTSL 28.51□□□□□ -1.053e-6■■■■□ 20.6
SUB1P53999 NDUFS3-203ENST00000525212 530 ntTSL 26.07□□□□□ -1.443e-6■■■■□ 20.6
SUB1P53999 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.192e-8■■■■□ 20.6
SUB1P53999 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.26□□□□□ -0.292e-8■■■■□ 20.6
SUB1P53999 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.49□□□□□ -0.412e-8■■■■□ 20.6
SUB1P53999 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.3□□□□□ -0.442e-8■■■■□ 20.6
SUB1P53999 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.612e-8■■■■□ 20.6
SUB1P53999 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.14e-8■■■■□ 20.5
SUB1P53999 HDAC1-206ENST00000476391 2409 ntTSL 1 (best)10.98□□□□□ -0.654e-8■■■■□ 20.5
SUB1P53999 HSPD1-207ENST00000439605 578 ntTSL 414.39□□□□□ -0.115e-9■■■■□ 20.5
SUB1P53999 HSPD1-205ENST00000428204 549 ntTSL 48.72□□□□□ -1.015e-9■■■■□ 20.5
SUB1P53999 HSPD1-211ENST00000476746 853 ntTSL 27.14□□□□□ -1.275e-9■■■■□ 20.5
SUB1P53999 HSPD1-209ENST00000452200 888 ntTSL 56.15□□□□□ -1.425e-9■■■■□ 20.5
SUB1P53999 HSPD1-210ENST00000461097 714 ntTSL 25.76□□□□□ -1.495e-9■■■■□ 20.5
SUB1P53999 HSPD1-208ENST00000440114 619 ntTSL 55.28□□□□□ -1.565e-9■■■■□ 20.5
SUB1P53999 HSPD1-204ENST00000426480 529 ntTSL 45.01□□□□□ -1.615e-9■■■■□ 20.5
SUB1P53999 HSPD1-206ENST00000430176 754 ntTSL 54.2□□□□□ -1.745e-9■■■■□ 20.5
SUB1P53999 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.75■□□□□ 0.273e-8■■■■□ 20.5
SUB1P53999 ACP1-202ENST00000272067 1552 ntAPPRIS ALT1 TSL 1 (best) BASIC9.35□□□□□ -0.913e-8■■■■□ 20.5
SUB1P53999 RPL24-203ENST00000469605 799 ntTSL 2 BASIC7.99□□□□□ -1.134e-59■■■■□ 20.5
SUB1P53999 RPL10-208ENST00000449494 622 ntTSL 511.47□□□□□ -0.573e-13■■■■□ 20.5
SUB1P53999 RPL10-205ENST00000427682 457 ntTSL 57.95□□□□□ -1.143e-13■■■■□ 20.5
SUB1P53999 RPL10-206ENST00000428169 292 ntTSL 57.32□□□□□ -1.243e-13■■■■□ 20.5
SUB1P53999 SLC2A3-205ENST00000486749 4414 ntTSL 1 (best)7.34□□□□□ -1.232e-8■■■■□ 20.5
SUB1P53999 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.372e-8■■■■□ 20.5
SUB1P53999 ACSM3-213ENST00000568235 558 ntTSL 48.8□□□□□ -18e-7■■■■□ 20.5
SUB1P53999 ACSM3-205ENST00000561584 561 ntTSL 48.53□□□□□ -1.048e-7■■■■□ 20.5
SUB1P53999 ACSM3-202ENST00000440284 1517 ntTSL 1 (best) BASIC8.34□□□□□ -1.078e-7■■■■□ 20.5
SUB1P53999 ACSM3-209ENST00000564701 756 ntTSL 37.08□□□□□ -1.288e-7■■■■□ 20.5
SUB1P53999 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.139e-7■■■■□ 20.5
SUB1P53999 AP3S1-202ENST00000395548 1180 ntTSL 1 (best)3.92□□□□□ -1.789e-7■■■■□ 20.5
SUB1P53999 AP3S1-203ENST00000505423 611 ntTSL 23.39□□□□□ -1.879e-7■■■■□ 20.5
SUB1P53999 RPL17-201ENST00000578528 481 ntTSL 318.16■□□□□ 0.52e-21■■■■□ 20.5
SUB1P53999 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.013e-11■■■■□ 20.4
SUB1P53999 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.83□□□□□ -0.23e-11■■■■□ 20.4
SUB1P53999 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.933e-11■■■■□ 20.4
SUB1P53999 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.425e-7■■■■□ 20.4
SUB1P53999 MTA2-202ENST00000524902 2577 ntTSL 1 (best) BASIC8.9□□□□□ -0.995e-7■■■■□ 20.4
SUB1P53999 COX4I1-204ENST00000562929 452 ntTSL 510.19□□□□□ -0.781e-11■■■■□ 20.4
SUB1P53999 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.453e-7■■■■□ 20.4
SUB1P53999 ANAPC5-218ENST00000541887 2400 ntTSL 5 BASIC6.35□□□□□ -1.393e-7■■■■□ 20.4
SUB1P53999 IDH3B-209ENST00000488299 1620 ntTSL 213.72□□□□□ -0.215e-7■■■■□ 20.4
SUB1P53999 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.265e-7■■■■□ 20.4
SUB1P53999 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.435e-7■■■■□ 20.4
SUB1P53999 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.525e-7■■■■□ 20.4
SUB1P53999 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.02□□□□□ -0.491e-9■■■■□ 20.4
SUB1P53999 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC11.58□□□□□ -0.561e-9■■■■□ 20.4
SUB1P53999 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC11.71□□□□□ -0.533e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.63e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.613e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-218ENST00000510678 1996 ntTSL 510.96□□□□□ -0.653e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-223ENST00000514332 2444 ntTSL 210.79□□□□□ -0.683e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC10.76□□□□□ -0.693e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.763e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-206ENST00000502904 2913 ntTSL 28.15□□□□□ -1.13e-19■■■■□ 20.3
SUB1P53999 HNRNPH1-227ENST00000515481 5564 ntTSL 24.99□□□□□ -1.613e-19■■■■□ 20.3
SUB1P53999 PPP1CC-210ENST00000553024 2797 ntTSL 25.49□□□□□ -1.533e-20■■■■□ 20.3
SUB1P53999 PPP1CC-207ENST00000551582 563 ntTSL 42.5□□□□□ -2.013e-20■■■■□ 20.3
SUB1P53999 PPP1CC-203ENST00000546904 1133 ntTSL 22.1□□□□□ -2.073e-20■■■■□ 20.3
SUB1P53999 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.061e-8■■■■□ 20.3
SUB1P53999 BLOC1S6-217ENST00000568597 592 ntTSL 215.42■□□□□ 0.061e-8■■■■□ 20.3
SUB1P53999 BLOC1S6-219ENST00000568963 480 ntTSL 413.47□□□□□ -0.251e-8■■■■□ 20.3
SUB1P53999 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.47□□□□□ -0.251e-8■■■■□ 20.3
SUB1P53999 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.29□□□□□ -0.281e-8■■■■□ 20.3
Retrieved 100 of 11,644 protein–RNA pairs in 151.3 ms