Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ENOSF1-210ENST00000581332 451 ntTSL 418.79■□□□□ 0.63e-6■■■□□ 15.3
SMNDC1O75940 IRF3-214ENST00000596788 447 ntTSL 318.37■□□□□ 0.533e-6■■■□□ 15.3
SMNDC1O75940 DHX38-202ENST00000562774 500 ntTSL 418.31■□□□□ 0.523e-6■■■□□ 15.3
SMNDC1O75940 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.96■□□□□ 0.473e-6■■■□□ 15.3
SMNDC1O75940 TECR-213ENST00000598408 508 ntTSL 317.78■□□□□ 0.443e-6■■■□□ 15.3
SMNDC1O75940 NSUN5P2-202ENST00000444583 1180 ntTSL 1 (best)17.67■□□□□ 0.421e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-202ENST00000417331 735 ntTSL 517.64■□□□□ 0.411e-29■■■□□ 15.3
SMNDC1O75940 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.42■□□□□ 0.383e-6■■■□□ 15.3
SMNDC1O75940 SLC16A3-216ENST00000583025 955 ntTSL 217.3■□□□□ 0.363e-8■■■□□ 15.3
SMNDC1O75940 CCAR2-204ENST00000520536 2173 ntTSL 216.81■□□□□ 0.283e-6■■■□□ 15.3
SMNDC1O75940 IRF3-219ENST00000597636 2874 ntTSL 516.77■□□□□ 0.283e-6■■■□□ 15.3
SMNDC1O75940 IRF3-209ENST00000595034 739 ntTSL 316.71■□□□□ 0.273e-6■■■□□ 15.3
SMNDC1O75940 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.61■□□□□ 0.253e-6■■■□□ 15.3
SMNDC1O75940 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.233e-6■■■□□ 15.3
SMNDC1O75940 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.217e-10■■■□□ 15.3
SMNDC1O75940 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.36■□□□□ 0.211e-6■■■□□ 15.3
SMNDC1O75940 IRF3-205ENST00000593337 633 ntTSL 316.31■□□□□ 0.23e-6■■■□□ 15.3
SMNDC1O75940 IRF3-216ENST00000597180 301 ntTSL 516.13■□□□□ 0.173e-6■■■□□ 15.3
SMNDC1O75940 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.173e-6■■■□□ 15.3
SMNDC1O75940 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.06■□□□□ 0.163e-6■■■□□ 15.3
SMNDC1O75940 NSUN5P2-203ENST00000457352 1529 ntBASIC16.03■□□□□ 0.161e-6■■■□□ 15.3
SMNDC1O75940 CCAR2-205ENST00000520738 2633 ntTSL 216■□□□□ 0.153e-6■■■□□ 15.3
SMNDC1O75940 CLK4-211ENST00000522556 1249 ntTSL 1 (best)15.97■□□□□ 0.153e-6■■■□□ 15.3
SMNDC1O75940 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.93■□□□□ 0.141e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-209ENST00000521637 503 ntTSL 315.93■□□□□ 0.141e-29■■■□□ 15.3
SMNDC1O75940 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.121e-29■■■□□ 15.3
SMNDC1O75940 IRF3-208ENST00000594387 800 ntTSL 315.63■□□□□ 0.093e-6■■■□□ 15.3
SMNDC1O75940 IRF3-230ENST00000601809 768 ntTSL 215.6■□□□□ 0.093e-6■■■□□ 15.3
SMNDC1O75940 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.083e-6■■■□□ 15.3
SMNDC1O75940 ILF3-221ENST00000591649 2579 ntTSL 215.56■□□□□ 0.083e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-210ENST00000522164 571 ntTSL 215.54■□□□□ 0.081e-29■■■□□ 15.3
SMNDC1O75940 CLK4-204ENST00000520126 1316 ntTSL 215.42■□□□□ 0.063e-6■■■□□ 15.3
SMNDC1O75940 NSUN5P2-204ENST00000485741 1647 ntTSL 1 (best)15.33■□□□□ 0.041e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-204ENST00000518881 3404 ntTSL 1 (best)15.27■□□□□ 0.041e-29■■■□□ 15.3
SMNDC1O75940 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.05■□□□□ -03e-6■■■□□ 15.3
SMNDC1O75940 TECR-223ENST00000601350 687 ntTSL 314.98□□□□□ -0.013e-6■■■□□ 15.3
SMNDC1O75940 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.87□□□□□ -0.033e-6■■■□□ 15.3
SMNDC1O75940 TECR-210ENST00000597607 1164 ntTSL 314.86□□□□□ -0.033e-6■■■□□ 15.3
SMNDC1O75940 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.033e-6■■■□□ 15.3
SMNDC1O75940 CCAR2-209ENST00000521436 1840 ntTSL 514.69□□□□□ -0.063e-6■■■□□ 15.3
SMNDC1O75940 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.083e-6■■■□□ 15.3
SMNDC1O75940 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.093e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-212ENST00000523930 823 ntTSL 514.39□□□□□ -0.111e-29■■■□□ 15.3
SMNDC1O75940 IRF3-210ENST00000595240 567 ntTSL 214.38□□□□□ -0.113e-6■■■□□ 15.3
SMNDC1O75940 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.113e-6■■■□□ 15.3
SMNDC1O75940 CTTN-212ENST00000527962 587 ntTSL 214.3□□□□□ -0.123e-6■■■□□ 15.3
SMNDC1O75940 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.133e-6■■■□□ 15.3
SMNDC1O75940 IRF3-226ENST00000600453 700 ntTSL 314.08□□□□□ -0.163e-6■■■□□ 15.3
SMNDC1O75940 CLK4-205ENST00000520199 857 ntTSL 213.95□□□□□ -0.183e-6■■■□□ 15.3
SMNDC1O75940 TECR-222ENST00000601187 559 ntTSL 313.54□□□□□ -0.243e-6■■■□□ 15.3
SMNDC1O75940 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.54□□□□□ -0.243e-6■■■□□ 15.3
SMNDC1O75940 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.54□□□□□ -0.243e-6■■■□□ 15.3
SMNDC1O75940 TECR-216ENST00000598987 1202 ntTSL 213.54□□□□□ -0.243e-6■■■□□ 15.3
SMNDC1O75940 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC13.53□□□□□ -0.247e-9■■■□□ 15.3
SMNDC1O75940 XPO1-206ENST00000428210 6776 ntTSL 213.49□□□□□ -0.257e-10■■■□□ 15.3
SMNDC1O75940 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.24□□□□□ -0.293e-6■■■□□ 15.3
SMNDC1O75940 ITPA-206ENST00000461029 378 ntTSL 513.21□□□□□ -0.291e-7■■■□□ 15.3
SMNDC1O75940 CCAR2-206ENST00000520861 3560 ntTSL 1 (best) BASIC13.1□□□□□ -0.313e-6■■■□□ 15.3
SMNDC1O75940 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.92□□□□□ -0.343e-6■■■□□ 15.3
SMNDC1O75940 MCM3AP-201ENST00000291688 6193 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.43e-6■■■□□ 15.3
SMNDC1O75940 GSR-203ENST00000523295 913 ntTSL 312.5□□□□□ -0.412e-11■■■□□ 15.3
SMNDC1O75940 IRF3-229ENST00000601373 680 ntTSL 212.46□□□□□ -0.413e-6■■■□□ 15.3
SMNDC1O75940 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC12.32□□□□□ -0.443e-6■■■□□ 15.3
SMNDC1O75940 IRF3-212ENST00000596756 931 ntTSL 512.24□□□□□ -0.453e-6■■■□□ 15.3
SMNDC1O75940 MCM3AP-207ENST00000486937 4593 ntTSL 212.16□□□□□ -0.463e-6■■■□□ 15.3
SMNDC1O75940 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC11.97□□□□□ -0.493e-6■■■□□ 15.3
SMNDC1O75940 IRF3-218ENST00000597369 550 ntTSL 211.73□□□□□ -0.533e-6■■■□□ 15.3
SMNDC1O75940 STK36-203ENST00000414413 563 ntTSL 511.5□□□□□ -0.573e-6■■■□□ 15.3
SMNDC1O75940 ILF3-220ENST00000590869 531 ntTSL 511.45□□□□□ -0.583e-6■■■□□ 15.3
SMNDC1O75940 TECR-203ENST00000593775 720 ntTSL 211.39□□□□□ -0.593e-6■■■□□ 15.3
SMNDC1O75940 HSPD1-201ENST00000345042 2299 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.631e-16■■■□□ 15.3
SMNDC1O75940 IRF3-206ENST00000593818 924 ntTSL 210.98□□□□□ -0.653e-6■■■□□ 15.3
SMNDC1O75940 MCM3AP-202ENST00000397708 6333 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.663e-6■■■□□ 15.3
SMNDC1O75940 MIR4517-201ENST00000578855 79 ntBASIC10.9□□□□□ -0.667e-9■■■□□ 15.3
SMNDC1O75940 STK36-207ENST00000440309 4721 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.673e-6■■■□□ 15.3
SMNDC1O75940 ILF3-205ENST00000586544 3859 ntTSL 1 (best)10.84□□□□□ -0.673e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.693e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-211ENST00000523883 3651 ntTSL 210.5□□□□□ -0.731e-29■■■□□ 15.3
SMNDC1O75940 CTTN-208ENST00000498223 523 ntTSL 310.19□□□□□ -0.783e-6■■■□□ 15.3
SMNDC1O75940 TECR-224ENST00000601461 828 ntTSL 310□□□□□ -0.813e-6■■■□□ 15.3
SMNDC1O75940 STK36-202ENST00000392105 4821 ntTSL 1 (best) BASIC10□□□□□ -0.813e-6■■■□□ 15.3
SMNDC1O75940 MCM3AP-210ENST00000496607 4075 ntTSL 29.78□□□□□ -0.843e-6■■■□□ 15.3
SMNDC1O75940 NFATC2IP-203ENST00000564978 2350 ntTSL 1 (best) BASIC9.37□□□□□ -0.917e-9■■■□□ 15.3
SMNDC1O75940 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.913e-6■■■□□ 15.3
SMNDC1O75940 TECR-206ENST00000594958 601 ntTSL 39.37□□□□□ -0.913e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-211ENST00000448224 583 ntTSL 59.34□□□□□ -0.913e-6■■■□□ 15.3
SMNDC1O75940 STK36-201ENST00000295709 4933 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.923e-6■■■□□ 15.3
SMNDC1O75940 GSR-202ENST00000521479 582 ntTSL 39.07□□□□□ -0.962e-11■■■□□ 15.3
SMNDC1O75940 CLK4-207ENST00000520909 1305 ntTSL 1 (best)9□□□□□ -0.973e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-207ENST00000520654 3018 ntTSL 1 (best)8.96□□□□□ -0.982e-71■■■□□ 15.3
SMNDC1O75940 TECR-217ENST00000599101 584 ntTSL 28.95□□□□□ -0.983e-6■■■□□ 15.3
SMNDC1O75940 TECR-212ENST00000598333 822 ntTSL 38.93□□□□□ -0.983e-6■■■□□ 15.3
SMNDC1O75940 HSPD1-212ENST00000482167 491 ntTSL 1 (best)8.86□□□□□ -0.991e-16■■■□□ 15.3
SMNDC1O75940 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.097e-10■■■□□ 15.3
SMNDC1O75940 HSPD1-209ENST00000452200 888 ntTSL 58.25□□□□□ -1.091e-16■■■□□ 15.3
SMNDC1O75940 XPO1-209ENST00000443240 565 ntTSL 47.54□□□□□ -1.23e-6■■■□□ 15.3
SMNDC1O75940 XPO1-212ENST00000457483 488 ntTSL 47.37□□□□□ -1.233e-6■■■□□ 15.3
SMNDC1O75940 HSPD1-213ENST00000486181 648 ntTSL 27.31□□□□□ -1.241e-16■■■□□ 15.3
SMNDC1O75940 TTLL4-214ENST00000465558 1688 ntTSL 27.24□□□□□ -1.253e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC7.24□□□□□ -1.253e-6■■■□□ 15.3
Retrieved 100 of 11,362 protein–RNA pairs in 274.6 ms