RNA–Protein interactions for RNA: ENST00000520909.5

CLK4-207, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,305 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-207ENST00000520909 AEBP2Q6ZN18 517 aaPredicted RBP31.63■■■□□ 2.65
CLK4-207ENST00000520909 CHIC1Q5VXU3 224 aa29.56■■■□□ 2.32
CLK4-207ENST00000520909 SENP3Q9H4L4 574 aaPredicted RBP27.02■■□□□ 1.92
CLK4-207ENST00000520909 PHF23Q9BUL5 403 aaPredicted RBP26.62■■□□□ 1.85
CLK4-207ENST00000520909 FOXD1Q16676 465 aa25.27■■□□□ 1.64
CLK4-207ENST00000520909 POTEDQ86YR6 584 aa24.06■■□□□ 1.44
CLK4-207ENST00000520909 MSH5O43196 834 aa23.8■■□□□ 1.4
CLK4-207ENST00000520909 PLPPR3Q6T4P5 718 aa23.66■■□□□ 1.38
CLK4-207ENST00000520909 PIAS4Q8N2W9 510 aaPredicted RBP23.47■■□□□ 1.35
CLK4-207ENST00000520909 PPP6R1Q9UPN7 881 aa23.28■■□□□ 1.32
CLK4-207ENST00000520909 ADRA2BP18089 450 aa23.15■■□□□ 1.3
CLK4-207ENST00000520909 MAPK8IP2Q13387 824 aaPredicted RBP21.43■■□□□ 1.02
CLK4-207ENST00000520909 DMRT2Q9Y5R5 561 aa21.36■■□□□ 1.01
CLK4-207ENST00000520909 SCAF1Q9H7N4 1312 aaKnown RBP21.18■□□□□ 0.98
CLK4-207ENST00000520909 PPP4R3CPQ6ZMV5 832 aa20.74■□□□□ 0.91
CLK4-207ENST00000520909 CACNB1Q02641 598 aaPredicted RBP20.72■□□□□ 0.91
CLK4-207ENST00000520909 DCAF8L1A6NGE4 600 aa20.5■□□□□ 0.87
CLK4-207ENST00000520909 HOXD11P31277 338 aaPredicted RBP20.4■□□□□ 0.86
CLK4-207ENST00000520909 CNKSR2Q8WXI2 1034 aa20.34■□□□□ 0.85
CLK4-207ENST00000520909 RNF39Q9H2S5 420 aa20.28■□□□□ 0.84
CLK4-207ENST00000520909 RNF216Q9NWF9 866 aaPredicted RBP20.13■□□□□ 0.81
CLK4-207ENST00000520909 NCBP3Q53F19 620 aaKnown RBP20.01■□□□□ 0.79
CLK4-207ENST00000520909 C1QBPQ07021 282 aaKnown RBP19.94■□□□□ 0.78
CLK4-207ENST00000520909 DNAJC5BQ9UF47 199 aa19.77■□□□□ 0.76
CLK4-207ENST00000520909 NPM3O75607 178 aaKnown RBP19.64■□□□□ 0.73
CLK4-207ENST00000520909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.41■□□□□ 0.73e-8■■■■□ 20.2
CLK4-207ENST00000520909 KCNA4P22459 653 aa19.3■□□□□ 0.68
CLK4-207ENST00000520909 U3KPZ7 1027 aaPredicted RBP18.98■□□□□ 0.63
CLK4-207ENST00000520909 SPINK5Q9NQ38 1064 aaPredicted RBP18.85■□□□□ 0.61
CLK4-207ENST00000520909 DSG3P32926 999 aa18.83■□□□□ 0.61
CLK4-207ENST00000520909 CAPN15O75808 1086 aa18.81■□□□□ 0.6
CLK4-207ENST00000520909 POTEHQ6S545 545 aa18.74■□□□□ 0.59
CLK4-207ENST00000520909 SLC4A2P04920 1241 aa18.73■□□□□ 0.59
CLK4-207ENST00000520909 APLP2Q06481 763 aa18.47■□□□□ 0.55
CLK4-207ENST00000520909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.46■□□□□ 0.55
CLK4-207ENST00000520909 HNRNPUL2Q1KMD3 747 aaKnown RBP18.46■□□□□ 0.55
CLK4-207ENST00000520909 TRHP20396 242 aaPredicted RBP18.41■□□□□ 0.54
CLK4-207ENST00000520909 ABCB7O75027 752 aa18.35■□□□□ 0.53
CLK4-207ENST00000520909 ZNF219Q9P2Y4 722 aaPredicted RBP18.34■□□□□ 0.53
CLK4-207ENST00000520909 SAMD1Q6SPF0 538 aaPredicted RBP18.33■□□□□ 0.53
CLK4-207ENST00000520909 SLC4A1APQ9BWU0 796 aaKnown RBP18.27■□□□□ 0.52
CLK4-207ENST00000520909 MYCNP04198 464 aaPredicted RBP18.19■□□□□ 0.5
CLK4-207ENST00000520909 FOXD4L1Q9NU39 408 aa18.02■□□□□ 0.48
CLK4-207ENST00000520909 RBM42Q9BTD8 480 aaKnown RBP17.96■□□□□ 0.46
CLK4-207ENST00000520909 POLA2Q14181 598 aa17.85■□□□□ 0.45
CLK4-207ENST00000520909 CHRDL2Q6WN34 429 aa17.77■□□□□ 0.44
CLK4-207ENST00000520909 ATF5Q9Y2D1 282 aaPredicted RBP17.72■□□□□ 0.43
CLK4-207ENST00000520909 ZBTB22O15209 634 aa17.71■□□□□ 0.42
CLK4-207ENST00000520909 ZBTB12Q9Y330 459 aaPredicted RBP17.51■□□□□ 0.39
CLK4-207ENST00000520909 ATXN8OSP0DMR3 200 aa17.49■□□□□ 0.39
CLK4-207ENST00000520909 AKT1S1Q96B36 256 aa17.45■□□□□ 0.38
CLK4-207ENST00000520909 SP7Q8TDD2 431 aaPredicted RBP17.35■□□□□ 0.37
CLK4-207ENST00000520909 REM2Q8IYK8 340 aaPredicted RBP17.3■□□□□ 0.36
CLK4-207ENST00000520909 OSCARQ8IYS5 282 aa17.26■□□□□ 0.35
CLK4-207ENST00000520909 PIP4P2Q8N4L2 257 aa17.26■□□□□ 0.35
CLK4-207ENST00000520909 PITPNM1O00562 1244 aa17.13■□□□□ 0.33
CLK4-207ENST00000520909 FBLN2P98095 1184 aa17.11■□□□□ 0.33
CLK4-207ENST00000520909 FXR2P51116 673 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLK4-207ENST00000520909 HAX1O00165 279 aa17.05■□□□□ 0.32
CLK4-207ENST00000520909 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
CLK4-207ENST00000520909 SPDYE2BA6NHP3 402 aa16.96■□□□□ 0.3
CLK4-207ENST00000520909 SPDYE6P0CI01 402 aa16.96■□□□□ 0.3
CLK4-207ENST00000520909 SPDYE2Q495Y8 402 aa16.96■□□□□ 0.3
CLK4-207ENST00000520909 MKRN4PQ13434 485 aaPredicted RBP16.9■□□□□ 0.3
CLK4-207ENST00000520909 EVX2Q03828 476 aa16.84■□□□□ 0.29
CLK4-207ENST00000520909 EHMT2Q96KQ7 1210 aa16.81■□□□□ 0.28
CLK4-207ENST00000520909 ZNF692Q9BU19 519 aaPredicted RBP16.79■□□□□ 0.28
CLK4-207ENST00000520909 SSUH2Q9Y2M2 353 aa16.7■□□□□ 0.26
CLK4-207ENST00000520909 PRKAR2AP13861 404 aaKnown RBP16.68■□□□□ 0.26
CLK4-207ENST00000520909 SPDYE1Q8NFV5 336 aaPredicted RBP16.66■□□□□ 0.26
CLK4-207ENST00000520909 CLEC11AQ9Y240 323 aa16.65■□□□□ 0.26
CLK4-207ENST00000520909 C19orf67A6NJJ6 358 aa16.55■□□□□ 0.24
CLK4-207ENST00000520909 PABPN1Q86U42 306 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLK4-207ENST00000520909 GABBR2O75899 941 aa16.43■□□□□ 0.22
CLK4-207ENST00000520909 CHADLQ6NUI6 762 aa16.4■□□□□ 0.22
CLK4-207ENST00000520909 PRR29P0C7W0 189 aa16.39■□□□□ 0.21
CLK4-207ENST00000520909 LHX8Q68G74 356 aa16.27■□□□□ 0.2
CLK4-207ENST00000520909 SPDYE4A6NLX3 237 aa16.19■□□□□ 0.18
CLK4-207ENST00000520909 STAG3Q9UJ98 1225 aa16.13■□□□□ 0.17
CLK4-207ENST00000520909 CD44P16070 742 aaKnown RBP16.12■□□□□ 0.17
CLK4-207ENST00000520909 FARP1Q9Y4F1 1045 aaPredicted RBP16.1■□□□□ 0.17
CLK4-207ENST00000520909 POTEIP0CG38 1075 aa16.09■□□□□ 0.17
CLK4-207ENST00000520909 CLCN6P51797 869 aa15.96■□□□□ 0.15
CLK4-207ENST00000520909 CREBZFQ9NS37 354 aa15.92■□□□□ 0.14
CLK4-207ENST00000520909 DCBLD2Q96PD2 775 aa15.86■□□□□ 0.13
CLK4-207ENST00000520909 ZNF579Q8NAF0 562 aaKnown RBP15.84■□□□□ 0.13
CLK4-207ENST00000520909 ZRANB1Q9UGI0 708 aa15.81■□□□□ 0.12
CLK4-207ENST00000520909 PROM2Q8N271 834 aa15.75■□□□□ 0.11
CLK4-207ENST00000520909 NPM1P06748 294 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLK4-207ENST00000520909 GALR2O43603 387 aaPredicted RBP15.69■□□□□ 0.1
CLK4-207ENST00000520909 PAK3O75914 559 aaPredicted RBP15.67■□□□□ 0.1
CLK4-207ENST00000520909 MNX1P50219 401 aaPredicted RBP15.63■□□□□ 0.09
CLK4-207ENST00000520909 PLSCR2Q9NRY7 297 aa15.6■□□□□ 0.09
CLK4-207ENST00000520909 OTUD5Q96G74 571 aa15.57■□□□□ 0.08
CLK4-207ENST00000520909 PHF12Q96QT6 1004 aa15.56■□□□□ 0.08
CLK4-207ENST00000520909 POTEB2H3BUK9 544 aa15.54■□□□□ 0.08
CLK4-207ENST00000520909 PLEKHG5O94827 1062 aa15.5■□□□□ 0.07
CLK4-207ENST00000520909 MIER1Q8N108 512 aa15.49■□□□□ 0.07
CLK4-207ENST00000520909 PELP1Q8IZL8 1130 aaKnown RBP15.44■□□□□ 0.06
CLK4-207ENST00000520909 FKBP8Q14318 412 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms