RNA–Protein interactions for RNA: ENST00000522556.1

CLK4-211, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,249 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-211ENST00000522556 NISCHQ9Y2I1 1504 aa43.81■■■■■ 4.6
CLK4-211ENST00000522556 CCDC180Q9P1Z9 1646 aa38.99■■■■□ 3.83
CLK4-211ENST00000522556 ABCC9O60706 1549 aa38.3■■■■□ 3.72
CLK4-211ENST00000522556 RB1CC1Q8TDY2 1594 aa36.7■■■■□ 3.46
CLK4-211ENST00000522556 NACADO15069 1562 aa36.61■■■■□ 3.45
CLK4-211ENST00000522556 DCAF8L2P0C7V8 631 aa36.58■■■■□ 3.45
CLK4-211ENST00000522556 ZCCHC6Q5VYS8 1495 aaKnown RBP36.51■■■■□ 3.44
CLK4-211ENST00000522556 MYO15BQ96JP2 1530 aa36.31■■■■□ 3.4
CLK4-211ENST00000522556 DCAF1Q9Y4B6 1507 aa36.17■■■■□ 3.38
CLK4-211ENST00000522556 UNC13AQ9UPW8 1703 aa36.07■■■■□ 3.36
CLK4-211ENST00000522556 PABPN1Q86U42 306 aaKnown RBP eCLIP35.75■■■■□ 3.31
CLK4-211ENST00000522556 BICRAQ9NZM4 1560 aa35.73■■■■□ 3.31
CLK4-211ENST00000522556 SCRIBQ14160 1630 aa35.68■■■■□ 3.3
CLK4-211ENST00000522556 DNAJC5BQ9UF47 199 aa35.25■■■■□ 3.23
CLK4-211ENST00000522556 SHROOM4Q9ULL8 1493 aa35.11■■■■□ 3.21
CLK4-211ENST00000522556 EIF4G1Q04637 1599 aaKnown RBP34.73■■■■□ 3.15
CLK4-211ENST00000522556 CC2D2AQ9P2K1 1620 aa34.63■■■■□ 3.13
CLK4-211ENST00000522556 CECR2Q9BXF3 1484 aa34.35■■■■□ 3.09
CLK4-211ENST00000522556 SMARCA4P51532 1647 aa34.06■■■■□ 3.04
CLK4-211ENST00000522556 BAZ1AQ9NRL2 1556 aaPredicted RBP33.93■■■■□ 3.02
CLK4-211ENST00000522556 ATAD2BQ9ULI0 1458 aa33.85■■■■□ 3.01
CLK4-211ENST00000522556 MROH2BQ7Z745 1585 aa33.85■■■■□ 3.01
CLK4-211ENST00000522556 NCAPD3P42695 1498 aa33.78■■■■□ 3
CLK4-211ENST00000522556 SMARCA2P51531 1590 aa33.75■■■□□ 2.99
CLK4-211ENST00000522556 PEG3Q9GZU2 1588 aa33.67■■■□□ 2.98
CLK4-211ENST00000522556 HMGXB3Q12766 1538 aa33.65■■■□□ 2.98
CLK4-211ENST00000522556 BAZ1BQ9UIG0 1483 aaKnown RBP33.55■■■□□ 2.96
CLK4-211ENST00000522556 WIZO95785 1651 aa33.5■■■□□ 2.95
CLK4-211ENST00000522556 RSF1Q96T23 1441 aaPredicted RBP33.36■■■□□ 2.93
CLK4-211ENST00000522556 NESP48681 1621 aa33.17■■■□□ 2.9
CLK4-211ENST00000522556 TOP2AP11388 1531 aaKnown RBP33.06■■■□□ 2.88
CLK4-211ENST00000522556 LAMC3Q9Y6N6 1575 aa32.93■■■□□ 2.86
CLK4-211ENST00000522556 ERCC6Q03468 1493 aa32.92■■■□□ 2.86
CLK4-211ENST00000522556 CADPSQ9ULU8 1353 aa32.79■■■□□ 2.84
CLK4-211ENST00000522556 KIF21AQ7Z4S6 1674 aa32.78■■■□□ 2.84
CLK4-211ENST00000522556 THOC2Q8NI27 1593 aaKnown RBP32.67■■■□□ 2.82
CLK4-211ENST00000522556 CCDC88BA6NC98 1476 aa32.67■■■□□ 2.82
CLK4-211ENST00000522556 PDS5BQ9NTI5 1447 aa32.63■■■□□ 2.81
CLK4-211ENST00000522556 CFTRP13569 1480 aa32.61■■■□□ 2.81
CLK4-211ENST00000522556 CUX2O14529 1486 aa32.57■■■□□ 2.8
CLK4-211ENST00000522556 FANCD2Q9BXW9 1451 aa32.48■■■□□ 2.79
CLK4-211ENST00000522556 PRDM2Q13029 1718 aa32.45■■■□□ 2.78
CLK4-211ENST00000522556 SUPT5HO00267 1087 aaKnown RBP32.44■■■□□ 2.78
CLK4-211ENST00000522556 CEP164Q9UPV0 1460 aa32.42■■■□□ 2.78
CLK4-211ENST00000522556 MRC2Q9UBG0 1479 aa32.41■■■□□ 2.78
CLK4-211ENST00000522556 WDR62O43379 1518 aa32.33■■■□□ 2.77
CLK4-211ENST00000522556 URB2Q14146 1524 aaKnown RBP32.22■■■□□ 2.75
CLK4-211ENST00000522556 TOPBP1Q92547 1522 aa31.97■■■□□ 2.71
CLK4-211ENST00000522556 DNMBPQ6XZF7 1577 aa31.91■■■□□ 2.7
CLK4-211ENST00000522556 ABCC8Q09428 1581 aa31.79■■■□□ 2.68
CLK4-211ENST00000522556 CUX1P39880 1505 aa31.75■■■□□ 2.67
CLK4-211ENST00000522556 ZNF608Q9ULD9 1512 aaPredicted RBP31.71■■■□□ 2.67
CLK4-211ENST00000522556 IFT140Q96RY7 1462 aa31.71■■■□□ 2.67
CLK4-211ENST00000522556 POLA1P09884 1462 aaPredicted RBP31.7■■■□□ 2.66
CLK4-211ENST00000522556 TARBP1Q13395 1621 aaKnown RBP31.67■■■□□ 2.66
CLK4-211ENST00000522556 DNAJC5Q9H3Z4 198 aa31.65■■■□□ 2.66
CLK4-211ENST00000522556 FGD5Q6ZNL6 1462 aa31.62■■■□□ 2.65
CLK4-211ENST00000522556 RAD54L2Q9Y4B4 1467 aa31.6■■■□□ 2.65
CLK4-211ENST00000522556 EIF4G3O43432 1585 aaKnown RBP31.58■■■□□ 2.65
CLK4-211ENST00000522556 SOGA1O94964 1423 aa31.49■■■□□ 2.63
CLK4-211ENST00000522556 SYNJ1O43426 1573 aa31.47■■■□□ 2.63
CLK4-211ENST00000522556 AQRO60306 1485 aaKnown RBP eCLIP31.47■■■□□ 2.636e-7■■■□□ 17.9
CLK4-211ENST00000522556 WDR97A6NE52 1622 aa31.44■■■□□ 2.62
CLK4-211ENST00000522556 BIVM-ERCC5R4GMW8 1640 aa31.42■■■□□ 2.62
CLK4-211ENST00000522556 WRNQ14191 1432 aaPredicted RBP eCLIP31.42■■■□□ 2.62
CLK4-211ENST00000522556 TOP2BQ02880 1626 aa31.4■■■□□ 2.62
CLK4-211ENST00000522556 TDRD9Q8NDG6 1382 aaKnown RBP31.39■■■□□ 2.62
CLK4-211ENST00000522556 ABCA10Q8WWZ4 1543 aa31.26■■■□□ 2.59
CLK4-211ENST00000522556 CHD1O14646 1710 aa31.24■■■□□ 2.59
CLK4-211ENST00000522556 ABCA5Q8WWZ7 1642 aa31.22■■■□□ 2.59
CLK4-211ENST00000522556 PBRM1Q86U86 1689 aa31.2■■■□□ 2.59
CLK4-211ENST00000522556 SNAPC4Q5SXM2 1469 aa31.2■■■□□ 2.58
CLK4-211ENST00000522556 GAPVD1Q14C86 1478 aa31.15■■■□□ 2.58
CLK4-211ENST00000522556 OSCARQ8IYS5 282 aa31.14■■■□□ 2.58
CLK4-211ENST00000522556 GRIN2BQ13224 1484 aa31.14■■■□□ 2.57
CLK4-211ENST00000522556 MAGI1Q96QZ7 1491 aaPredicted RBP31.06■■■□□ 2.56
CLK4-211ENST00000522556 FBLN2P98095 1184 aa31.03■■■□□ 2.56
CLK4-211ENST00000522556 SYNJ2O15056 1496 aa30.95■■■□□ 2.55
CLK4-211ENST00000522556 ADAMTS12P58397 1594 aa30.93■■■□□ 2.54
CLK4-211ENST00000522556 CHMP7Q8WUX9 453 aaPredicted RBP30.88■■■□□ 2.53
CLK4-211ENST00000522556 ERICH3Q5RHP9 1530 aa30.86■■■□□ 2.53
CLK4-211ENST00000522556 RIMBP3CA6NJZ7 1639 aa30.85■■■□□ 2.53
CLK4-211ENST00000522556 RIMBP3BA6NNM3 1639 aa30.85■■■□□ 2.53
CLK4-211ENST00000522556 RIMBP3Q9UFD9 1639 aa30.85■■■□□ 2.53
CLK4-211ENST00000522556 CLASP1Q7Z460 1538 aa30.84■■■□□ 2.53
CLK4-211ENST00000522556 ARHGEF11O15085 1522 aa30.8■■■□□ 2.52
CLK4-211ENST00000522556 GRIN2AQ12879 1464 aa30.78■■■□□ 2.52
CLK4-211ENST00000522556 FHAD1B1AJZ9 1412 aa30.75■■■□□ 2.51
CLK4-211ENST00000522556 KIF27Q86VH2 1401 aa30.72■■■□□ 2.51
CLK4-211ENST00000522556 CEP170Q5SW79 1584 aa30.71■■■□□ 2.51
CLK4-211ENST00000522556 TRIM41Q8WV44 630 aa30.66■■■□□ 2.5
CLK4-211ENST00000522556 NUP160Q12769 1436 aa30.64■■■□□ 2.5
CLK4-211ENST00000522556 IGF1RP08069 1367 aa30.64■■■□□ 2.5
CLK4-211ENST00000522556 RUSC2Q8N2Y8 1516 aa30.61■■■□□ 2.49
CLK4-211ENST00000522556 CUL7Q14999 1698 aa30.58■■■□□ 2.49
CLK4-211ENST00000522556 ARAP1Q96P48 1450 aa30.58■■■□□ 2.49
CLK4-211ENST00000522556 ERCC6L2Q5T890 1561 aa30.5■■■□□ 2.47
CLK4-211ENST00000522556 SHROOM2Q13796 1616 aa30.47■■■□□ 2.47
CLK4-211ENST00000522556 CARMIL1Q5VZK9 1371 aa30.44■■■□□ 2.46
CLK4-211ENST00000522556 CYB5RLQ6IPT4 315 aa30.44■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms