Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 NBPF21P-201ENST00000425093 1451 ntBASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 AC063952.2-201ENST00000498792 1227 ntBASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 AP000550.4-202ENST00000639755 178 ntBASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A6A6NMZ7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A6A6NMZ7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 AC006011.2-201ENST00000621313 1158 ntBASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 CYP21A1P-202ENST00000354927 1481 ntBASIC18.52■□□□□ 0.55
COL6A6A6NMZ7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 AC009947.2-201ENST00000444014 672 ntBASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 NAPSB-206ENST00000562112 1266 ntBASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL6A6A6NMZ7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A6A6NMZ7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 AL121829.2-201ENST00000620908 328 ntBASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.49■□□□□ 0.55
COL6A6A6NMZ7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms