Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DRB4X5D2U9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
HLA-DRB4X5D2U9 MIR762-201ENST00000390236 83 ntBASIC19.6■□□□□ 0.73
HLA-DRB4X5D2U9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.6■□□□□ 0.73
HLA-DRB4X5D2U9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DRB4X5D2U9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HLA-DRB4X5D2U9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.6■□□□□ 0.73
HLA-DRB4X5D2U9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HLA-DRB4X5D2U9 CHML-205ENST00000638160 705 ntTSL 3 BASIC19.59■□□□□ 0.73
HLA-DRB4X5D2U9 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.58■□□□□ 0.73
HLA-DRB4X5D2U9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.58■□□□□ 0.72
HLA-DRB4X5D2U9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
HLA-DRB4X5D2U9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HLA-DRB4X5D2U9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HLA-DRB4X5D2U9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.57■□□□□ 0.72
HLA-DRB4X5D2U9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
HLA-DRB4X5D2U9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DRB4X5D2U9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
HLA-DRB4X5D2U9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.55■□□□□ 0.72
HLA-DRB4X5D2U9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DRB4X5D2U9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DRB4X5D2U9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DRB4X5D2U9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DRB4X5D2U9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DRB4X5D2U9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19.54■□□□□ 0.72
HLA-DRB4X5D2U9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
HLA-DRB4X5D2U9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DRB4X5D2U9 AC010864.1-201ENST00000609407 1511 ntBASIC19.53■□□□□ 0.72
HLA-DRB4X5D2U9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DRB4X5D2U9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.53■□□□□ 0.72
HLA-DRB4X5D2U9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DRB4X5D2U9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.52■□□□□ 0.72
HLA-DRB4X5D2U9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DRB4X5D2U9 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
HLA-DRB4X5D2U9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
HLA-DRB4X5D2U9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
HLA-DRB4X5D2U9 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DRB4X5D2U9 AC005559.1-201ENST00000589661 871 ntBASIC19.51■□□□□ 0.71
HLA-DRB4X5D2U9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DRB4X5D2U9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DRB4X5D2U9 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.49■□□□□ 0.71
HLA-DRB4X5D2U9 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DRB4X5D2U9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DRB4X5D2U9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DRB4X5D2U9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HLA-DRB4X5D2U9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DRB4X5D2U9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DRB4X5D2U9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DRB4X5D2U9 AP006261.1-201ENST00000584783 668 ntBASIC19.46■□□□□ 0.71
HLA-DRB4X5D2U9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DRB4X5D2U9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
HLA-DRB4X5D2U9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DRB4X5D2U9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DRB4X5D2U9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DRB4X5D2U9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DRB4X5D2U9 MIR3665-201ENST00000578708 105 ntBASIC19.44■□□□□ 0.7
HLA-DRB4X5D2U9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DRB4X5D2U9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-DRB4X5D2U9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HLA-DRB4X5D2U9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DRB4X5D2U9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-DRB4X5D2U9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
HLA-DRB4X5D2U9 DUX4L28-201ENST00000623687 678 ntBASIC19.41■□□□□ 0.7
HLA-DRB4X5D2U9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DRB4X5D2U9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DRB4X5D2U9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC19.4■□□□□ 0.7
HLA-DRB4X5D2U9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DRB4X5D2U9 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DRB4X5D2U9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DRB4X5D2U9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC19.39■□□□□ 0.69
HLA-DRB4X5D2U9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DRB4X5D2U9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DRB4X5D2U9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC19.38■□□□□ 0.69
HLA-DRB4X5D2U9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DRB4X5D2U9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC19.38■□□□□ 0.69
HLA-DRB4X5D2U9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC19.38■□□□□ 0.69
HLA-DRB4X5D2U9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DRB4X5D2U9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DRB4X5D2U9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms