Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NKX2-3Q8TAU0 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
NKX2-3Q8TAU0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
NKX2-3Q8TAU0 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.41■■■□□ 2.62
NKX2-3Q8TAU0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.41■■■□□ 2.62
NKX2-3Q8TAU0 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
NKX2-3Q8TAU0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
NKX2-3Q8TAU0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
NKX2-3Q8TAU0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
NKX2-3Q8TAU0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NKX2-3Q8TAU0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.38■■■□□ 2.61
NKX2-3Q8TAU0 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
NKX2-3Q8TAU0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.36■■■□□ 2.61
NKX2-3Q8TAU0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NKX2-3Q8TAU0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NKX2-3Q8TAU0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NKX2-3Q8TAU0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NKX2-3Q8TAU0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NKX2-3Q8TAU0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NKX2-3Q8TAU0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.33■■■□□ 2.61
NKX2-3Q8TAU0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.33■■■□□ 2.61
NKX2-3Q8TAU0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NKX2-3Q8TAU0 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NKX2-3Q8TAU0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NKX2-3Q8TAU0 MIR639-201ENST00000384974 98 ntBASIC31.32■■■□□ 2.6
NKX2-3Q8TAU0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
NKX2-3Q8TAU0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
NKX2-3Q8TAU0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.32■■■□□ 2.6
NKX2-3Q8TAU0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
NKX2-3Q8TAU0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
NKX2-3Q8TAU0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.31■■■□□ 2.6
NKX2-3Q8TAU0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.31■■■□□ 2.6
NKX2-3Q8TAU0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
NKX2-3Q8TAU0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
NKX2-3Q8TAU0 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.3■■■□□ 2.6
NKX2-3Q8TAU0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.3■■■□□ 2.6
NKX2-3Q8TAU0 AL135925.1-201ENST00000605920 1701 ntBASIC31.29■■■□□ 2.6
NKX2-3Q8TAU0 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NKX2-3Q8TAU0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NKX2-3Q8TAU0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.28■■■□□ 2.6
NKX2-3Q8TAU0 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.28■■■□□ 2.6
NKX2-3Q8TAU0 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.27■■■□□ 2.6
NKX2-3Q8TAU0 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.27■■■□□ 2.6
NKX2-3Q8TAU0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
NKX2-3Q8TAU0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NKX2-3Q8TAU0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.26■■■□□ 2.6
NKX2-3Q8TAU0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NKX2-3Q8TAU0 DUX4L29-201ENST00000425409 679 ntBASIC31.26■■■□□ 2.59
NKX2-3Q8TAU0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.26■■■□□ 2.59
NKX2-3Q8TAU0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
NKX2-3Q8TAU0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
NKX2-3Q8TAU0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NKX2-3Q8TAU0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NKX2-3Q8TAU0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.24■■■□□ 2.59
NKX2-3Q8TAU0 ABCB10P1-201ENST00000614297 2181 ntBASIC31.24■■■□□ 2.59
NKX2-3Q8TAU0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
NKX2-3Q8TAU0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.22■■■□□ 2.59
NKX2-3Q8TAU0 MIR6090-201ENST00000622481 60 ntBASIC31.22■■■□□ 2.59
NKX2-3Q8TAU0 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NKX2-3Q8TAU0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.21■■■□□ 2.59
NKX2-3Q8TAU0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NKX2-3Q8TAU0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.2■■■□□ 2.59
NKX2-3Q8TAU0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.19■■■□□ 2.58
NKX2-3Q8TAU0 AC010864.1-201ENST00000609407 1511 ntBASIC31.19■■■□□ 2.58
NKX2-3Q8TAU0 ST7-AS1-201ENST00000456775 1889 ntBASIC31.19■■■□□ 2.58
NKX2-3Q8TAU0 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
NKX2-3Q8TAU0 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
NKX2-3Q8TAU0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
NKX2-3Q8TAU0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.17■■■□□ 2.58
NKX2-3Q8TAU0 HSD17B1P1-201ENST00000590052 955 ntBASIC31.17■■■□□ 2.58
NKX2-3Q8TAU0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
NKX2-3Q8TAU0 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.16■■■□□ 2.58
NKX2-3Q8TAU0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NKX2-3Q8TAU0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
NKX2-3Q8TAU0 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.16■■■□□ 2.58
NKX2-3Q8TAU0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
NKX2-3Q8TAU0 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NKX2-3Q8TAU0 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
NKX2-3Q8TAU0 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NKX2-3Q8TAU0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NKX2-3Q8TAU0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NKX2-3Q8TAU0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
NKX2-3Q8TAU0 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NKX2-3Q8TAU0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
NKX2-3Q8TAU0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.11■■■□□ 2.57
NKX2-3Q8TAU0 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.11■■■□□ 2.57
NKX2-3Q8TAU0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
NKX2-3Q8TAU0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.07■■■□□ 2.56
NKX2-3Q8TAU0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
NKX2-3Q8TAU0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
NKX2-3Q8TAU0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.05■■■□□ 2.56
NKX2-3Q8TAU0 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NKX2-3Q8TAU0 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.04■■■□□ 2.56
NKX2-3Q8TAU0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
NKX2-3Q8TAU0 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
NKX2-3Q8TAU0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
NKX2-3Q8TAU0 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.03■■■□□ 2.56
NKX2-3Q8TAU0 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NKX2-3Q8TAU0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NKX2-3Q8TAU0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.02■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms