Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SNF8-207ENST00000509995 560 ntTSL 314.13□□□□□ -0.153e-6■■■■■ 38.3
DDX55Q8NHQ9 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC14.03□□□□□ -0.163e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-204ENST00000548281 554 ntTSL 413.89□□□□□ -0.191e-15■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-214ENST00000552218 797 ntTSL 5 BASIC13.78□□□□□ -0.21e-15■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-213ENST00000551962 578 ntTSL 513.78□□□□□ -0.21e-15■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-209ENST00000564649 514 ntTSL 213.69□□□□□ -0.223e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-217ENST00000532182 674 ntTSL 413.69□□□□□ -0.223e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)13.64□□□□□ -0.233e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-207ENST00000526110 1924 ntTSL 5 BASIC13.58□□□□□ -0.233e-6■■■■■ 38.3
DDX55Q8NHQ9 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC13.45□□□□□ -0.263e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.273e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-206ENST00000563426 457 ntTSL 313.26□□□□□ -0.293e-6■■■■■ 38.3
DDX55Q8NHQ9 TMEM208-210ENST00000565201 832 ntTSL 2 BASIC13.26□□□□□ -0.293e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-202ENST00000455864 880 ntTSL 2 BASIC13.06□□□□□ -0.321e-15■■■■■ 38.3
DDX55Q8NHQ9 SNF8-201ENST00000290330 951 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.343e-6■■■■■ 38.3
DDX55Q8NHQ9 GYS1-202ENST00000323798 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.43e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-201ENST00000262061 1897 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.451e-15■■■■■ 38.3
DDX55Q8NHQ9 CUX1-204ENST00000393824 2331 ntTSL 2 BASIC12.22□□□□□ -0.456e-12■■■■■ 38.3
DDX55Q8NHQ9 AC099811.2-202ENST00000592248 694 ntTSL 312.01□□□□□ -0.493e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-208ENST00000550027 553 ntTSL 1 (best)11.81□□□□□ -0.521e-15■■■■■ 38.3
DDX55Q8NHQ9 CHAF1A-206ENST00000587739 875 ntTSL 511.76□□□□□ -0.533e-6■■■■■ 38.3
DDX55Q8NHQ9 GYS1-201ENST00000263276 3378 ntTSL 1 (best) BASIC11.64□□□□□ -0.553e-6■■■■■ 38.3
DDX55Q8NHQ9 UNC45A-216ENST00000639885 3255 ntTSL 5 BASIC11.61□□□□□ -0.556e-12■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-209ENST00000550171 1026 ntTSL 211.57□□□□□ -0.561e-15■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-212ENST00000551779 1462 ntAPPRIS ALT1 TSL 2 BASIC11.52□□□□□ -0.561e-15■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-218ENST00000532636 2306 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.593e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-203ENST00000360162 3114 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.63e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-211ENST00000512243 863 ntTSL 211.12□□□□□ -0.633e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-201ENST00000277900 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.633e-6■■■■■ 38.3
DDX55Q8NHQ9 AC099811.2-201ENST00000585562 646 ntTSL 311.1□□□□□ -0.633e-6■■■■■ 38.3
DDX55Q8NHQ9 NIP7-202ENST00000254941 1887 ntTSL 1 (best) BASIC10.85□□□□□ -0.673e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-215ENST00000552362 575 ntTSL 4 BASIC10.61□□□□□ -0.711e-15■■■■■ 38.3
DDX55Q8NHQ9 SNF8-204ENST00000506104 455 ntTSL 310.36□□□□□ -0.753e-6■■■■■ 38.3
DDX55Q8NHQ9 SH3KBP1-203ENST00000379716 3819 ntTSL 2 BASIC10.03□□□□□ -0.83e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-226ENST00000636840 117 ntTSL 59.87□□□□□ -0.833e-6■■■■■ 38.3
DDX55Q8NHQ9 RPA1-201ENST00000254719 4340 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.843e-6■■■■■ 38.3
DDX55Q8NHQ9 SNF8-210ENST00000511214 429 ntTSL 29.49□□□□□ -0.893e-6■■■■■ 38.3
DDX55Q8NHQ9 GYS1-206ENST00000496048 536 ntTSL 39.19□□□□□ -0.943e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-231ENST00000640501 151 ntTSL 59.13□□□□□ -0.953e-6■■■■■ 38.3
DDX55Q8NHQ9 APEX2-201ENST00000374987 3245 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.973e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC8.84□□□□□ -0.991e-15■■■■■ 38.3
DDX55Q8NHQ9 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.023e-6■■■■■ 38.3
DDX55Q8NHQ9 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.063e-6■■■■■ 38.3
DDX55Q8NHQ9 RPA1-207ENST00000574049 3849 ntTSL 58.21□□□□□ -1.13e-6■■■■■ 38.3
DDX55Q8NHQ9 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC8.06□□□□□ -1.121e-15■■■■■ 38.3
DDX55Q8NHQ9 PRC1-217ENST00000560423 755 ntTSL 38□□□□□ -1.133e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-206ENST00000468345 683 ntTSL 37.97□□□□□ -1.133e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-220ENST00000533238 465 ntTSL 37.61□□□□□ -1.193e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-212ENST00000528292 1112 ntTSL 27.42□□□□□ -1.223e-6■■■■■ 38.3
DDX55Q8NHQ9 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.27□□□□□ -1.253e-6■■■■■ 38.3
DDX55Q8NHQ9 MARCH6-214ENST00000606497 1334 ntTSL 47.26□□□□□ -1.252e-18■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-216ENST00000532167 570 ntTSL 46.87□□□□□ -1.313e-6■■■■■ 38.3
DDX55Q8NHQ9 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.373e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-219ENST00000496517 762 ntTSL 56.18□□□□□ -1.423e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-209ENST00000475954 449 ntTSL 26.18□□□□□ -1.423e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-212ENST00000486014 317 ntTSL 36□□□□□ -1.453e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-208ENST00000473669 526 ntTSL 25.71□□□□□ -1.53e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-220ENST00000497125 763 ntTSL 35.55□□□□□ -1.523e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-205ENST00000525463 583 ntTSL 54.98□□□□□ -1.613e-6■■■■■ 38.3
DDX55Q8NHQ9 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.661e-11■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-223ENST00000534567 588 ntTSL 44.67□□□□□ -1.663e-6■■■■■ 38.3
DDX55Q8NHQ9 ECT2-209ENST00000437296 2266 ntTSL 54.36□□□□□ -1.713e-6■■■■■ 38.3
DDX55Q8NHQ9 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.98□□□□□ -1.773e-6■■■■■ 38.3
DDX55Q8NHQ9 HSPA8-204ENST00000524590 536 ntTSL 53.78□□□□□ -1.83e-6■■■■■ 38.3
DDX55Q8NHQ9 ADD3-205ENST00000468251 697 ntTSL 53.75□□□□□ -1.813e-6■■■■■ 38.3
DDX55Q8NHQ9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 26e-8■■■■■ 38.2
DDX55Q8NHQ9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC26.35■■□□□ 1.816e-8■■■■■ 38.2
DDX55Q8NHQ9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC25.02■■□□□ 1.66e-8■■■■■ 38.2
DDX55Q8NHQ9 AP2S1-208ENST00000600964 458 ntTSL 1 (best)22.88■■□□□ 1.256e-8■■■■■ 38.2
DDX55Q8NHQ9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC22.3■■□□□ 1.166e-8■■■■■ 38.2
DDX55Q8NHQ9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC22.3■■□□□ 1.166e-8■■■■■ 38.2
DDX55Q8NHQ9 AP2S1-209ENST00000601498 898 ntTSL 2 BASIC14.31□□□□□ -0.126e-8■■■■■ 38.2
DDX55Q8NHQ9 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC23.15■■□□□ 1.31e-10■■■■■ 38.2
DDX55Q8NHQ9 ISCU-207ENST00000539580 1169 ntTSL 1 (best)23.15■■□□□ 1.31e-10■■■■■ 38.2
DDX55Q8NHQ9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.231e-10■■■■■ 38.2
DDX55Q8NHQ9 ISCU-211ENST00000545932 3685 ntTSL 213.7□□□□□ -0.221e-10■■■■■ 38.2
DDX55Q8NHQ9 PIEZO1-203ENST00000419505 1635 ntTSL 1 (best)23.77■■□□□ 1.41e-11■■■■■ 38.2
DDX55Q8NHQ9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC22.96■■□□□ 1.271e-11■■■■■ 38.2
DDX55Q8NHQ9 PIEZO1-214ENST00000521877 686 ntTSL 221.77■■□□□ 1.081e-11■■■■■ 38.2
DDX55Q8NHQ9 PIEZO1-208ENST00000484567 2464 ntTSL 219.36■□□□□ 0.691e-11■■■■■ 38.2
DDX55Q8NHQ9 PIEZO1-213ENST00000518793 660 ntTSL 314.94□□□□□ -0.021e-11■■■■■ 38.2
DDX55Q8NHQ9 LINC00339-207ENST00000634712 1388 ntTSL 519.11■□□□□ 0.654e-7■■■■■ 38.1
DDX55Q8NHQ9 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.98■□□□□ 0.314e-7■■■■■ 38.1
DDX55Q8NHQ9 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC16.3■□□□□ 0.24e-7■■■■■ 38.1
DDX55Q8NHQ9 LINC00339-201ENST00000404210 1189 ntBASIC14.53□□□□□ -0.084e-7■■■■■ 38.1
DDX55Q8NHQ9 LINC00339-210ENST00000635675 1404 ntTSL 5 BASIC11.75□□□□□ -0.534e-7■■■■■ 38.1
DDX55Q8NHQ9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 12e-8■■■■■ 38
DDX55Q8NHQ9 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -02e-8■■■■■ 38
DDX55Q8NHQ9 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC14.1□□□□□ -0.152e-8■■■■■ 38
DDX55Q8NHQ9 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.352e-8■■■■■ 38
DDX55Q8NHQ9 MBTD1-203ENST00000415868 5099 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.72e-8■■■■■ 38
DDX55Q8NHQ9 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.612e-8■■■■■ 38
DDX55Q8NHQ9 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.622e-8■■■■■ 38
DDX55Q8NHQ9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.911e-7■■■■■ 37.8
DDX55Q8NHQ9 RBX1-203ENST00000476110 574 ntTSL 212.35□□□□□ -0.435e-7■■■■■ 37.8
DDX55Q8NHQ9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.242e-21■■■■■ 37.2
DDX55Q8NHQ9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.08■■□□□ 1.132e-21■■■■■ 37.2
DDX55Q8NHQ9 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.9■□□□□ 0.462e-21■■■■■ 37.2
DDX55Q8NHQ9 SUMO3-206ENST00000479153 1736 ntTSL 215.53■□□□□ 0.082e-21■■■■■ 37.2
DDX55Q8NHQ9 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.042e-6■■■■■ 37.1
Retrieved 100 of 15,504 protein–RNA pairs in 421 ms