RNA–Protein interactions for RNA: ENST00000574049.1

RPA1-207, Transcript of replication protein A1, humanhuman

TSL 5

Gene RPA1, Length 3,849 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-207ENST00000574049 NISCHQ9Y2I1 1504 aa15.61■□□□□ 0.09
RPA1-207ENST00000574049 DCAF8L2P0C7V8 631 aa14.04□□□□□ -0.16
RPA1-207ENST00000574049 SHROOM4Q9ULL8 1493 aa13.56□□□□□ -0.24
RPA1-207ENST00000574049 ABCC9O60706 1549 aa13.34□□□□□ -0.27
RPA1-207ENST00000574049 CCDC180Q9P1Z9 1646 aa13.24□□□□□ -0.29
RPA1-207ENST00000574049 SUPT5HO00267 1087 aaKnown RBP13.16□□□□□ -0.3
RPA1-207ENST00000574049 CHIC1Q5VXU3 224 aa13.09□□□□□ -0.31
RPA1-207ENST00000574049 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
RPA1-207ENST00000574049 ZCCHC6Q5VYS8 1495 aaKnown RBP13.02□□□□□ -0.33
RPA1-207ENST00000574049 EHMT2Q96KQ7 1210 aa12.95□□□□□ -0.34
RPA1-207ENST00000574049 PABPN1Q86U42 306 aaKnown RBP eCLIP12.86□□□□□ -0.35
RPA1-207ENST00000574049 SCRIBQ14160 1630 aa12.73□□□□□ -0.37
RPA1-207ENST00000574049 DCAF1Q9Y4B6 1507 aa12.57□□□□□ -0.4
RPA1-207ENST00000574049 NACADO15069 1562 aa12.57□□□□□ -0.4
RPA1-207ENST00000574049 RB1CC1Q8TDY2 1594 aa12.56□□□□□ -0.4
RPA1-207ENST00000574049 AEBP2Q6ZN18 517 aaPredicted RBP12.46□□□□□ -0.41
RPA1-207ENST00000574049 CECR2Q9BXF3 1484 aa12.37□□□□□ -0.43
RPA1-207ENST00000574049 MYO15BQ96JP2 1530 aa12.37□□□□□ -0.43
RPA1-207ENST00000574049 FAM9AQ8IZU1 332 aaPredicted RBP12.32□□□□□ -0.44
RPA1-207ENST00000574049 RSF1Q96T23 1441 aaPredicted RBP12.27□□□□□ -0.45
RPA1-207ENST00000574049 PCGF6Q9BYE7 350 aa12.26□□□□□ -0.45
RPA1-207ENST00000574049 PLPPR3Q6T4P5 718 aa12.24□□□□□ -0.45
RPA1-207ENST00000574049 TTBK1Q5TCY1 1321 aaPredicted RBP12.21□□□□□ -0.45
RPA1-207ENST00000574049 TRIM41Q8WV44 630 aa12.19□□□□□ -0.46
RPA1-207ENST00000574049 MROH2BQ7Z745 1585 aa12.18□□□□□ -0.46
RPA1-207ENST00000574049 BICRAQ9NZM4 1560 aa12.06□□□□□ -0.48
RPA1-207ENST00000574049 BAZ1AQ9NRL2 1556 aaPredicted RBP12.05□□□□□ -0.48
RPA1-207ENST00000574049 RTN4Q9NQC3 1192 aaKnown RBP12.04□□□□□ -0.48
RPA1-207ENST00000574049 WIZO95785 1651 aa12.04□□□□□ -0.48
RPA1-207ENST00000574049 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
RPA1-207ENST00000574049 RANGAP1P46060 587 aaPredicted RBP12.02□□□□□ -0.49
RPA1-207ENST00000574049 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.49
RPA1-207ENST00000574049 PPARGC1BQ86YN6 1023 aaKnown RBP12□□□□□ -0.49
RPA1-207ENST00000574049 BAZ1BQ9UIG0 1483 aaKnown RBP11.94□□□□□ -0.5
RPA1-207ENST00000574049 SMARCA4P51532 1647 aa11.94□□□□□ -0.5
RPA1-207ENST00000574049 ATAD2BQ9ULI0 1458 aa11.9□□□□□ -0.5
RPA1-207ENST00000574049 DNAJC5BQ9UF47 199 aa11.9□□□□□ -0.5
RPA1-207ENST00000574049 CCDC88BA6NC98 1476 aa11.88□□□□□ -0.51
RPA1-207ENST00000574049 PHF23Q9BUL5 403 aaPredicted RBP11.86□□□□□ -0.51
RPA1-207ENST00000574049 EIF4G1Q04637 1599 aaKnown RBP11.85□□□□□ -0.51
RPA1-207ENST00000574049 UBTFP17480 764 aaKnown RBP11.81□□□□□ -0.52
RPA1-207ENST00000574049 SMARCA2P51531 1590 aa11.79□□□□□ -0.52
RPA1-207ENST00000574049 TOP2AP11388 1531 aaKnown RBP11.79□□□□□ -0.52
RPA1-207ENST00000574049 PELP1Q8IZL8 1130 aaKnown RBP11.72□□□□□ -0.53
RPA1-207ENST00000574049 ABCC8Q09428 1581 aa11.72□□□□□ -0.53
RPA1-207ENST00000574049 CC2D2AQ9P2K1 1620 aa11.72□□□□□ -0.53
RPA1-207ENST00000574049 NCAPD3P42695 1498 aa11.7□□□□□ -0.54
RPA1-207ENST00000574049 KCNA4P22459 653 aa11.66□□□□□ -0.54
RPA1-207ENST00000574049 WRNQ14191 1432 aaPredicted RBP eCLIP11.65□□□□□ -0.54
RPA1-207ENST00000574049 CSRNP3Q8WYN3 585 aa11.64□□□□□ -0.55
RPA1-207ENST00000574049 YTHDC1Q96MU7 727 aaKnown RBP11.63□□□□□ -0.55
RPA1-207ENST00000574049 HRCP23327 699 aa11.63□□□□□ -0.55
RPA1-207ENST00000574049 PRKCSHP14314 528 aaPredicted RBP11.62□□□□□ -0.55
RPA1-207ENST00000574049 APLP2Q06481 763 aa11.62□□□□□ -0.55
RPA1-207ENST00000574049 CADPSQ9ULU8 1353 aa11.61□□□□□ -0.55
RPA1-207ENST00000574049 ATP1B4Q9UN42 357 aaPredicted RBP11.6□□□□□ -0.55
RPA1-207ENST00000574049 NESP48681 1621 aa11.6□□□□□ -0.55
RPA1-207ENST00000574049 SOGA1O94964 1423 aa11.59□□□□□ -0.55
RPA1-207ENST00000574049 CCER1Q8TC90 406 aaPredicted RBP11.58□□□□□ -0.56
RPA1-207ENST00000574049 FBLN2P98095 1184 aa11.54□□□□□ -0.56
RPA1-207ENST00000574049 PEG3Q9GZU2 1588 aa11.54□□□□□ -0.56
RPA1-207ENST00000574049 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
RPA1-207ENST00000574049 HMGXB3Q12766 1538 aa11.52□□□□□ -0.57
RPA1-207ENST00000574049 RUSC2Q8N2Y8 1516 aa11.52□□□□□ -0.57
RPA1-207ENST00000574049 P3H3Q8IVL6 736 aa11.5□□□□□ -0.57
RPA1-207ENST00000574049 ERCC6Q03468 1493 aa11.48□□□□□ -0.57
RPA1-207ENST00000574049 FANCD2Q9BXW9 1451 aa11.48□□□□□ -0.57
RPA1-207ENST00000574049 DAXXQ9UER7 740 aaPredicted RBP11.47□□□□□ -0.57
RPA1-207ENST00000574049 CFTRP13569 1480 aa11.46□□□□□ -0.57
RPA1-207ENST00000574049 PDS5BQ9NTI5 1447 aa11.44□□□□□ -0.58
RPA1-207ENST00000574049 TDRD9Q8NDG6 1382 aaKnown RBP11.44□□□□□ -0.58
RPA1-207ENST00000574049 NCBP3Q53F19 620 aaKnown RBP11.43□□□□□ -0.58
RPA1-207ENST00000574049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.42□□□□□ -0.58
RPA1-207ENST00000574049 ITGAEP38570 1179 aa11.42□□□□□ -0.58
RPA1-207ENST00000574049 CUX2O14529 1486 aa11.41□□□□□ -0.58
RPA1-207ENST00000574049 SYNJ1O43426 1573 aa11.4□□□□□ -0.59
RPA1-207ENST00000574049 CEP164Q9UPV0 1460 aa11.39□□□□□ -0.59
RPA1-207ENST00000574049 RAD54L2Q9Y4B4 1467 aa11.38□□□□□ -0.59
RPA1-207ENST00000574049 ARID3CA6NKF2 412 aa11.38□□□□□ -0.59
RPA1-207ENST00000574049 TRIM26Q12899 539 aaPredicted RBP11.38□□□□□ -0.59
RPA1-207ENST00000574049 HNRNPUL2Q1KMD3 747 aaKnown RBP11.37□□□□□ -0.59
RPA1-207ENST00000574049 KIF27Q86VH2 1401 aa11.37□□□□□ -0.59
RPA1-207ENST00000574049 MYT1Q01538 1121 aa11.37□□□□□ -0.59
RPA1-207ENST00000574049 CUX1P39880 1505 aa11.34□□□□□ -0.59
RPA1-207ENST00000574049 FGD5Q6ZNL6 1462 aa11.34□□□□□ -0.59
RPA1-207ENST00000574049 CHMP7Q8WUX9 453 aaPredicted RBP11.31□□□□□ -0.6
RPA1-207ENST00000574049 CARMIL1Q5VZK9 1371 aa11.3□□□□□ -0.6
RPA1-207ENST00000574049 EEA1Q15075 1411 aa11.29□□□□□ -0.6
RPA1-207ENST00000574049 RAPGEF2Q9Y4G8 1499 aa11.28□□□□□ -0.6
RPA1-207ENST00000574049 GOLGA3Q08378 1498 aa11.28□□□□□ -0.6
RPA1-207ENST00000574049 CEP162Q5TB80 1403 aa11.28□□□□□ -0.6
RPA1-207ENST00000574049 TOPBP1Q92547 1522 aa11.26□□□□□ -0.61
RPA1-207ENST00000574049 CENPBP07199 599 aaPredicted RBP11.26□□□□□ -0.61
RPA1-207ENST00000574049 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.612e-9■■■■■ 30.9
RPA1-207ENST00000574049 CLIP1P30622 1438 aa11.25□□□□□ -0.61
RPA1-207ENST00000574049 IGF1RP08069 1367 aa11.25□□□□□ -0.61
RPA1-207ENST00000574049 TNIKQ9UKE5 1360 aa11.24□□□□□ -0.61
RPA1-207ENST00000574049 POLA1P09884 1462 aaPredicted RBP11.24□□□□□ -0.61
RPA1-207ENST00000574049 CNGB1Q14028 1251 aaPredicted RBP11.23□□□□□ -0.61
RPA1-207ENST00000574049 SLC4A1APQ9BWU0 796 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms