RNA–Protein interactions for RNA: ENST00000509995.5

SNF8-207, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-207ENST00000509995 NISCHQ9Y2I1 1504 aa28.46■■■□□ 2.15
SNF8-207ENST00000509995 ABCC9O60706 1549 aa26.85■■□□□ 1.89
SNF8-207ENST00000509995 CCDC180Q9P1Z9 1646 aa26.02■■□□□ 1.76
SNF8-207ENST00000509995 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
SNF8-207ENST00000509995 RB1CC1Q8TDY2 1594 aa25.18■■□□□ 1.62
SNF8-207ENST00000509995 PABPN1Q86U42 306 aaKnown RBP eCLIP24.78■■□□□ 1.565e-8■■■□□ 16.1
SNF8-207ENST00000509995 NACADO15069 1562 aa24.77■■□□□ 1.56
SNF8-207ENST00000509995 UNC13AQ9UPW8 1703 aa24.67■■□□□ 1.54
SNF8-207ENST00000509995 DNAJC5Q9H3Z4 198 aa24.54■■□□□ 1.52
SNF8-207ENST00000509995 BICRAQ9NZM4 1560 aa24.5■■□□□ 1.51
SNF8-207ENST00000509995 CECR2Q9BXF3 1484 aa24.29■■□□□ 1.48
SNF8-207ENST00000509995 DCAF8L2P0C7V8 631 aa24.28■■□□□ 1.48
SNF8-207ENST00000509995 CC2D2AQ9P2K1 1620 aa24.24■■□□□ 1.47
SNF8-207ENST00000509995 MYO15BQ96JP2 1530 aa24.14■■□□□ 1.45
SNF8-207ENST00000509995 SHROOM4Q9ULL8 1493 aa24.08■■□□□ 1.45
SNF8-207ENST00000509995 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
SNF8-207ENST00000509995 SCRIBQ14160 1630 aa23.6■■□□□ 1.37
SNF8-207ENST00000509995 CUX2O14529 1486 aa23.56■■□□□ 1.36
SNF8-207ENST00000509995 DCAF1Q9Y4B6 1507 aa23.48■■□□□ 1.35
SNF8-207ENST00000509995 ZCCHC6Q5VYS8 1495 aaKnown RBP23.41■■□□□ 1.34
SNF8-207ENST00000509995 ERCC6Q03468 1493 aa23.25■■□□□ 1.31
SNF8-207ENST00000509995 TRIM41Q8WV44 630 aa23.05■■□□□ 1.28
SNF8-207ENST00000509995 NCAPD3P42695 1498 aa22.85■■□□□ 1.25
SNF8-207ENST00000509995 THOC2Q8NI27 1593 aaKnown RBP22.83■■□□□ 1.25
SNF8-207ENST00000509995 NESP48681 1621 aa22.8■■□□□ 1.24
SNF8-207ENST00000509995 ATAD2BQ9ULI0 1458 aa22.66■■□□□ 1.22
SNF8-207ENST00000509995 HMGXB3Q12766 1538 aa22.65■■□□□ 1.22
SNF8-207ENST00000509995 SMARCA2P51531 1590 aa22.59■■□□□ 1.21
SNF8-207ENST00000509995 KIF21AQ7Z4S6 1674 aa22.55■■□□□ 1.2
SNF8-207ENST00000509995 LAMC3Q9Y6N6 1575 aa22.53■■□□□ 1.2
SNF8-207ENST00000509995 SMARCA4P51532 1647 aa22.43■■□□□ 1.18
SNF8-207ENST00000509995 BAZ1AQ9NRL2 1556 aaPredicted RBP22.41■■□□□ 1.18
SNF8-207ENST00000509995 BAZ1BQ9UIG0 1483 aaKnown RBP22.4■■□□□ 1.18
SNF8-207ENST00000509995 PDS5BQ9NTI5 1447 aa22.38■■□□□ 1.17
SNF8-207ENST00000509995 WDR62O43379 1518 aa22.28■■□□□ 1.16
SNF8-207ENST00000509995 MRC2Q9UBG0 1479 aa22.28■■□□□ 1.16
SNF8-207ENST00000509995 PEG3Q9GZU2 1588 aa22.24■■□□□ 1.15
SNF8-207ENST00000509995 OSCARQ8IYS5 282 aa22.23■■□□□ 1.15
SNF8-207ENST00000509995 RIMBP3CA6NJZ7 1639 aa22.16■■□□□ 1.14
SNF8-207ENST00000509995 RIMBP3BA6NNM3 1639 aa22.16■■□□□ 1.14
SNF8-207ENST00000509995 RIMBP3Q9UFD9 1639 aa22.16■■□□□ 1.14
SNF8-207ENST00000509995 CADPSQ9ULU8 1353 aa22.09■■□□□ 1.13
SNF8-207ENST00000509995 CEP164Q9UPV0 1460 aa21.99■■□□□ 1.11
SNF8-207ENST00000509995 ARHGEF11O15085 1522 aa21.97■■□□□ 1.11
SNF8-207ENST00000509995 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
SNF8-207ENST00000509995 AEBP2Q6ZN18 517 aaPredicted RBP21.89■■□□□ 1.09
SNF8-207ENST00000509995 FANCD2Q9BXW9 1451 aa21.87■■□□□ 1.09
SNF8-207ENST00000509995 TRHP20396 242 aaPredicted RBP21.83■■□□□ 1.09
SNF8-207ENST00000509995 CYB5RLQ6IPT4 315 aa21.77■■□□□ 1.08
SNF8-207ENST00000509995 URB2Q14146 1524 aaKnown RBP21.76■■□□□ 1.07
SNF8-207ENST00000509995 ARAP1Q96P48 1450 aa21.7■■□□□ 1.06
SNF8-207ENST00000509995 CFTRP13569 1480 aa21.68■■□□□ 1.06
SNF8-207ENST00000509995 ZNF608Q9ULD9 1512 aaPredicted RBP21.64■■□□□ 1.05
SNF8-207ENST00000509995 WIZO95785 1651 aa21.62■■□□□ 1.05
SNF8-207ENST00000509995 IFT140Q96RY7 1462 aa21.58■■□□□ 1.04
SNF8-207ENST00000509995 CHD1O14646 1710 aa21.55■■□□□ 1.04
SNF8-207ENST00000509995 EIF4G3O43432 1585 aaKnown RBP21.53■■□□□ 1.04
SNF8-207ENST00000509995 RSF1Q96T23 1441 aaPredicted RBP21.52■■□□□ 1.04
SNF8-207ENST00000509995 PRDM2Q13029 1718 aa21.49■■□□□ 1.03
SNF8-207ENST00000509995 TOPBP1Q92547 1522 aa21.36■■□□□ 1.01
SNF8-207ENST00000509995 AQRO60306 1485 aaKnown RBP eCLIP21.29■■□□□ 13e-6■■■□□ 17.8
SNF8-207ENST00000509995 FBLN2P98095 1184 aa21.29■■□□□ 1
SNF8-207ENST00000509995 TOP2AP11388 1531 aaKnown RBP21.29■■□□□ 1
SNF8-207ENST00000509995 TARBP1Q13395 1621 aaKnown RBP21.27■■□□□ 1
SNF8-207ENST00000509995 CLASP1Q7Z460 1538 aa21.26■□□□□ 0.99
SNF8-207ENST00000509995 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
SNF8-207ENST00000509995 DNMBPQ6XZF7 1577 aa21.22■□□□□ 0.99
SNF8-207ENST00000509995 SYNJ1O43426 1573 aa21.14■□□□□ 0.98
SNF8-207ENST00000509995 ILDR1Q86SU0 546 aaPredicted RBP21.12■□□□□ 0.97
SNF8-207ENST00000509995 POLA1P09884 1462 aaPredicted RBP21.09■□□□□ 0.97
SNF8-207ENST00000509995 SNAPC4Q5SXM2 1469 aa21.08■□□□□ 0.97
SNF8-207ENST00000509995 GAPVD1Q14C86 1478 aa21.07■□□□□ 0.96
SNF8-207ENST00000509995 CCDC88BA6NC98 1476 aa21.01■□□□□ 0.95
SNF8-207ENST00000509995 MAGI1Q96QZ7 1491 aaPredicted RBP21.01■□□□□ 0.95
SNF8-207ENST00000509995 WDR97A6NE52 1622 aa21■□□□□ 0.95
SNF8-207ENST00000509995 RAD54L2Q9Y4B4 1467 aa21■□□□□ 0.95
SNF8-207ENST00000509995 TDRD9Q8NDG6 1382 aaKnown RBP20.99■□□□□ 0.95
SNF8-207ENST00000509995 CHMP7Q8WUX9 453 aaPredicted RBP20.99■□□□□ 0.95
SNF8-207ENST00000509995 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
SNF8-207ENST00000509995 KIF13AQ9H1H9 1805 aa20.93■□□□□ 0.94
SNF8-207ENST00000509995 SOGA1O94964 1423 aa20.92■□□□□ 0.94
SNF8-207ENST00000509995 GRIN2BQ13224 1484 aa20.88■□□□□ 0.93
SNF8-207ENST00000509995 ERCC6L2Q5T890 1561 aa20.85■□□□□ 0.93
SNF8-207ENST00000509995 FGD5Q6ZNL6 1462 aa20.81■□□□□ 0.92
SNF8-207ENST00000509995 PBRM1Q86U86 1689 aa20.8■□□□□ 0.92
SNF8-207ENST00000509995 KDM4FA0A1W2PPD8 638 aa20.79■□□□□ 0.92
SNF8-207ENST00000509995 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
SNF8-207ENST00000509995 SHROOM2Q13796 1616 aa20.66■□□□□ 0.9
SNF8-207ENST00000509995 KDM6BO15054 1643 aa20.65■□□□□ 0.9
SNF8-207ENST00000509995 CUX1P39880 1505 aa20.65■□□□□ 0.9
SNF8-207ENST00000509995 ABCA5Q8WWZ7 1642 aa20.63■□□□□ 0.89
SNF8-207ENST00000509995 GRIN2AQ12879 1464 aa20.62■□□□□ 0.89
SNF8-207ENST00000509995 ABCC10Q5T3U5 1492 aa20.62■□□□□ 0.89
SNF8-207ENST00000509995 NUP160Q12769 1436 aa20.6■□□□□ 0.89
SNF8-207ENST00000509995 DIP2BQ9P265 1576 aa20.59■□□□□ 0.89
SNF8-207ENST00000509995 FAM69CQ0P6D2 419 aa20.58■□□□□ 0.89
SNF8-207ENST00000509995 MAPKBP1O60336 1514 aa20.54■□□□□ 0.88
SNF8-207ENST00000509995 ADAMTS12P58397 1594 aa20.54■□□□□ 0.88
SNF8-207ENST00000509995 ABCA10Q8WWZ4 1543 aa20.53■□□□□ 0.88
SNF8-207ENST00000509995 HECW2Q9P2P5 1572 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms