RNA–Protein interactions for RNA: ENST00000636840.1

PNKP-226, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 117 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-226ENST00000636840 NISCHQ9Y2I1 1504 aa19.53■□□□□ 0.72
PNKP-226ENST00000636840 CCDC180Q9P1Z9 1646 aa17.28■□□□□ 0.36
PNKP-226ENST00000636840 ABCC9O60706 1549 aa16.93■□□□□ 0.3
PNKP-226ENST00000636840 DCAF8L2P0C7V8 631 aa16.51■□□□□ 0.23
PNKP-226ENST00000636840 RB1CC1Q8TDY2 1594 aa16.32■□□□□ 0.2
PNKP-226ENST00000636840 NACADO15069 1562 aa16.3■□□□□ 0.2
PNKP-226ENST00000636840 ZCCHC6Q5VYS8 1495 aaKnown RBP16.23■□□□□ 0.19
PNKP-226ENST00000636840 MYO15BQ96JP2 1530 aa16.22■□□□□ 0.19
PNKP-226ENST00000636840 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
PNKP-226ENST00000636840 PABPN1Q86U42 306 aaKnown RBP eCLIP15.9■□□□□ 0.14
PNKP-226ENST00000636840 UNC13AQ9UPW8 1703 aa15.8■□□□□ 0.12
PNKP-226ENST00000636840 SCRIBQ14160 1630 aa15.79■□□□□ 0.12
PNKP-226ENST00000636840 BICRAQ9NZM4 1560 aa15.71■□□□□ 0.11
PNKP-226ENST00000636840 SHROOM4Q9ULL8 1493 aa15.65■□□□□ 0.1
PNKP-226ENST00000636840 DNAJC5BQ9UF47 199 aa15.5■□□□□ 0.07
PNKP-226ENST00000636840 EIF4G1Q04637 1599 aaKnown RBP15.35■□□□□ 0.05
PNKP-226ENST00000636840 CC2D2AQ9P2K1 1620 aa15.27■□□□□ 0.03
PNKP-226ENST00000636840 CECR2Q9BXF3 1484 aa15.22■□□□□ 0.03
PNKP-226ENST00000636840 BAZ1AQ9NRL2 1556 aaPredicted RBP15.15■□□□□ 0.02
PNKP-226ENST00000636840 SMARCA4P51532 1647 aa15.1■□□□□ 0.01
PNKP-226ENST00000636840 SMARCA2P51531 1590 aa15.07■□□□□ 0
PNKP-226ENST00000636840 NCAPD3P42695 1498 aa15.06■□□□□ 0
PNKP-226ENST00000636840 ATAD2BQ9ULI0 1458 aa15.06■□□□□ 0
PNKP-226ENST00000636840 MROH2BQ7Z745 1585 aa15.02■□□□□ -0
PNKP-226ENST00000636840 BAZ1BQ9UIG0 1483 aaKnown RBP14.96□□□□□ -0.01
PNKP-226ENST00000636840 PEG3Q9GZU2 1588 aa14.94□□□□□ -0.02
PNKP-226ENST00000636840 HMGXB3Q12766 1538 aa14.94□□□□□ -0.02
PNKP-226ENST00000636840 RSF1Q96T23 1441 aaPredicted RBP14.92□□□□□ -0.02
PNKP-226ENST00000636840 WIZO95785 1651 aa14.84□□□□□ -0.03
PNKP-226ENST00000636840 SUPT5HO00267 1087 aaKnown RBP14.72□□□□□ -0.05
PNKP-226ENST00000636840 TOP2AP11388 1531 aaKnown RBP14.71□□□□□ -0.06
PNKP-226ENST00000636840 CADPSQ9ULU8 1353 aa14.67□□□□□ -0.06
PNKP-226ENST00000636840 ERCC6Q03468 1493 aa14.65□□□□□ -0.06
PNKP-226ENST00000636840 LAMC3Q9Y6N6 1575 aa14.64□□□□□ -0.07
PNKP-226ENST00000636840 PDS5BQ9NTI5 1447 aa14.63□□□□□ -0.07
PNKP-226ENST00000636840 NESP48681 1621 aa14.63□□□□□ -0.07
PNKP-226ENST00000636840 CCDC88BA6NC98 1476 aa14.58□□□□□ -0.08
PNKP-226ENST00000636840 CFTRP13569 1480 aa14.53□□□□□ -0.08
PNKP-226ENST00000636840 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
PNKP-226ENST00000636840 CUX2O14529 1486 aa14.44□□□□□ -0.1
PNKP-226ENST00000636840 CEP164Q9UPV0 1460 aa14.44□□□□□ -0.1
PNKP-226ENST00000636840 KIF21AQ7Z4S6 1674 aa14.4□□□□□ -0.1
PNKP-226ENST00000636840 MRC2Q9UBG0 1479 aa14.39□□□□□ -0.11
PNKP-226ENST00000636840 THOC2Q8NI27 1593 aaKnown RBP14.33□□□□□ -0.12
PNKP-226ENST00000636840 PRDM2Q13029 1718 aa14.32□□□□□ -0.12
PNKP-226ENST00000636840 ABCC8Q09428 1581 aa14.3□□□□□ -0.12
PNKP-226ENST00000636840 WDR62O43379 1518 aa14.28□□□□□ -0.12
PNKP-226ENST00000636840 URB2Q14146 1524 aaKnown RBP14.25□□□□□ -0.13
PNKP-226ENST00000636840 TOPBP1Q92547 1522 aa14.2□□□□□ -0.14
PNKP-226ENST00000636840 DNMBPQ6XZF7 1577 aa14.18□□□□□ -0.14
PNKP-226ENST00000636840 IFT140Q96RY7 1462 aa14.15□□□□□ -0.14
PNKP-226ENST00000636840 SOGA1O94964 1423 aa14.11□□□□□ -0.15
PNKP-226ENST00000636840 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
PNKP-226ENST00000636840 POLA1P09884 1462 aaPredicted RBP14.08□□□□□ -0.16
PNKP-226ENST00000636840 CUX1P39880 1505 aa14.08□□□□□ -0.16
PNKP-226ENST00000636840 FGD5Q6ZNL6 1462 aa14.06□□□□□ -0.16
PNKP-226ENST00000636840 RAD54L2Q9Y4B4 1467 aa14.03□□□□□ -0.16
PNKP-226ENST00000636840 ZNF608Q9ULD9 1512 aaPredicted RBP14.01□□□□□ -0.17
PNKP-226ENST00000636840 TDRD9Q8NDG6 1382 aaKnown RBP14.01□□□□□ -0.17
PNKP-226ENST00000636840 DNAJC5Q9H3Z4 198 aa14.01□□□□□ -0.17
PNKP-226ENST00000636840 AQRO60306 1485 aaKnown RBP eCLIP13.99□□□□□ -0.17
PNKP-226ENST00000636840 OSCARQ8IYS5 282 aa13.99□□□□□ -0.17
PNKP-226ENST00000636840 TOP2BQ02880 1626 aa13.99□□□□□ -0.17
PNKP-226ENST00000636840 TARBP1Q13395 1621 aaKnown RBP13.99□□□□□ -0.17
PNKP-226ENST00000636840 FBLN2P98095 1184 aa13.96□□□□□ -0.17
PNKP-226ENST00000636840 BIVM-ERCC5R4GMW8 1640 aa13.96□□□□□ -0.17
PNKP-226ENST00000636840 SYNJ1O43426 1573 aa13.94□□□□□ -0.18
PNKP-226ENST00000636840 ABCA10Q8WWZ4 1543 aa13.94□□□□□ -0.18
PNKP-226ENST00000636840 WDR97A6NE52 1622 aa13.93□□□□□ -0.18
PNKP-226ENST00000636840 CHMP7Q8WUX9 453 aaPredicted RBP13.93□□□□□ -0.18
PNKP-226ENST00000636840 TRIM41Q8WV44 630 aa13.93□□□□□ -0.18
PNKP-226ENST00000636840 GRIN2BQ13224 1484 aa13.92□□□□□ -0.18
PNKP-226ENST00000636840 GAPVD1Q14C86 1478 aa13.92□□□□□ -0.18
PNKP-226ENST00000636840 EIF4G3O43432 1585 aaKnown RBP13.92□□□□□ -0.18
PNKP-226ENST00000636840 MAGI1Q96QZ7 1491 aaPredicted RBP13.85□□□□□ -0.19
PNKP-226ENST00000636840 SNAPC4Q5SXM2 1469 aa13.84□□□□□ -0.19
PNKP-226ENST00000636840 KIF27Q86VH2 1401 aa13.83□□□□□ -0.2
PNKP-226ENST00000636840 SYNJ2O15056 1496 aa13.8□□□□□ -0.2
PNKP-226ENST00000636840 ABCA5Q8WWZ7 1642 aa13.79□□□□□ -0.2
PNKP-226ENST00000636840 ERICH3Q5RHP9 1530 aa13.78□□□□□ -0.2
PNKP-226ENST00000636840 FHAD1B1AJZ9 1412 aa13.77□□□□□ -0.21
PNKP-226ENST00000636840 PBRM1Q86U86 1689 aa13.77□□□□□ -0.21
PNKP-226ENST00000636840 IGF1RP08069 1367 aa13.76□□□□□ -0.21
PNKP-226ENST00000636840 CHIC1Q5VXU3 224 aa13.73□□□□□ -0.21
PNKP-226ENST00000636840 CHD1O14646 1710 aa13.73□□□□□ -0.21
PNKP-226ENST00000636840 CARMIL1Q5VZK9 1371 aa13.71□□□□□ -0.22
PNKP-226ENST00000636840 GRIN2AQ12879 1464 aa13.69□□□□□ -0.22
PNKP-226ENST00000636840 ADAMTS12P58397 1594 aa13.67□□□□□ -0.22
PNKP-226ENST00000636840 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
PNKP-226ENST00000636840 CUL7Q14999 1698 aa13.64□□□□□ -0.23
PNKP-226ENST00000636840 JPH4Q96JJ6 628 aa13.62□□□□□ -0.23
PNKP-226ENST00000636840 RUSC2Q8N2Y8 1516 aa13.62□□□□□ -0.23
PNKP-226ENST00000636840 NUP160Q12769 1436 aa13.62□□□□□ -0.23
PNKP-226ENST00000636840 EEA1Q15075 1411 aa13.62□□□□□ -0.23
PNKP-226ENST00000636840 CYB5RLQ6IPT4 315 aa13.6□□□□□ -0.23
PNKP-226ENST00000636840 FAM9AQ8IZU1 332 aaPredicted RBP13.6□□□□□ -0.23
PNKP-226ENST00000636840 RAPGEF2Q9Y4G8 1499 aa13.6□□□□□ -0.23
PNKP-226ENST00000636840 CLASP1Q7Z460 1538 aa13.59□□□□□ -0.23
PNKP-226ENST00000636840 ARHGEF11O15085 1522 aa13.59□□□□□ -0.23
PNKP-226ENST00000636840 KIAA0586Q9BVV6 1533 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms