RNA–Protein interactions for RNA: ENST00000254941.6

NIP7-202, Transcript of NIP7, nucleolar pre-rRNA processing protein, humanhuman

TSL 1 (best) BASIC

Gene NIP7, Length 1,887 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7-202ENST00000254941 NISCHQ9Y2I1 1504 aa21.73■■□□□ 1.07
NIP7-202ENST00000254941 AEBP2Q6ZN18 517 aaPredicted RBP20.26■□□□□ 0.83
NIP7-202ENST00000254941 CHIC1Q5VXU3 224 aa19.14■□□□□ 0.65
NIP7-202ENST00000254941 CCDC180Q9P1Z9 1646 aa19.05■□□□□ 0.64
NIP7-202ENST00000254941 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
NIP7-202ENST00000254941 ABCC9O60706 1549 aa18.02■□□□□ 0.47
NIP7-202ENST00000254941 DCAF1Q9Y4B6 1507 aa18■□□□□ 0.47
NIP7-202ENST00000254941 DCAF8L2P0C7V8 631 aa17.9■□□□□ 0.46
NIP7-202ENST00000254941 MYO15BQ96JP2 1530 aa17.83■□□□□ 0.45
NIP7-202ENST00000254941 NACADO15069 1562 aa17.74■□□□□ 0.43
NIP7-202ENST00000254941 RB1CC1Q8TDY2 1594 aa17.6■□□□□ 0.41
NIP7-202ENST00000254941 SENP3Q9H4L4 574 aaPredicted RBP17.58■□□□□ 0.4
NIP7-202ENST00000254941 SHROOM4Q9ULL8 1493 aa17.58■□□□□ 0.4
NIP7-202ENST00000254941 SCRIBQ14160 1630 aa17.44■□□□□ 0.38
NIP7-202ENST00000254941 UNC13AQ9UPW8 1703 aa17.3■□□□□ 0.36
NIP7-202ENST00000254941 PHF23Q9BUL5 403 aaPredicted RBP17.18■□□□□ 0.34
NIP7-202ENST00000254941 BICRAQ9NZM4 1560 aa17.08■□□□□ 0.32
NIP7-202ENST00000254941 PABPN1Q86U42 306 aaKnown RBP eCLIP16.94■□□□□ 0.3
NIP7-202ENST00000254941 CECR2Q9BXF3 1484 aa16.87■□□□□ 0.29
NIP7-202ENST00000254941 SUPT5HO00267 1087 aaKnown RBP16.86■□□□□ 0.29
NIP7-202ENST00000254941 RSF1Q96T23 1441 aaPredicted RBP16.8■□□□□ 0.28
NIP7-202ENST00000254941 BAZ1AQ9NRL2 1556 aaPredicted RBP16.8■□□□□ 0.28
NIP7-202ENST00000254941 MROH2BQ7Z745 1585 aa16.77■□□□□ 0.28
NIP7-202ENST00000254941 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
NIP7-202ENST00000254941 WIZO95785 1651 aa16.65■□□□□ 0.26
NIP7-202ENST00000254941 EIF4G1Q04637 1599 aaKnown RBP16.56■□□□□ 0.24
NIP7-202ENST00000254941 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
NIP7-202ENST00000254941 SMARCA2P51531 1590 aa16.48■□□□□ 0.23
NIP7-202ENST00000254941 ATAD2BQ9ULI0 1458 aa16.47■□□□□ 0.23
NIP7-202ENST00000254941 TOP2AP11388 1531 aaKnown RBP16.46■□□□□ 0.23
NIP7-202ENST00000254941 BAZ1BQ9UIG0 1483 aaKnown RBP16.36■□□□□ 0.21
NIP7-202ENST00000254941 NCAPD3P42695 1498 aa16.36■□□□□ 0.21
NIP7-202ENST00000254941 CC2D2AQ9P2K1 1620 aa16.34■□□□□ 0.21
NIP7-202ENST00000254941 HMGXB3Q12766 1538 aa16.34■□□□□ 0.21
NIP7-202ENST00000254941 FOXD1Q16676 465 aa16.33■□□□□ 0.21
NIP7-202ENST00000254941 POTEDQ86YR6 584 aa16.29■□□□□ 0.2
NIP7-202ENST00000254941 CCDC88BA6NC98 1476 aa16.28■□□□□ 0.2
NIP7-202ENST00000254941 DNAJC5BQ9UF47 199 aa15.97■□□□□ 0.15
NIP7-202ENST00000254941 CFTRP13569 1480 aa15.96■□□□□ 0.15
NIP7-202ENST00000254941 PRDM2Q13029 1718 aa15.95■□□□□ 0.14
NIP7-202ENST00000254941 CADPSQ9ULU8 1353 aa15.92■□□□□ 0.14
NIP7-202ENST00000254941 ABCC8Q09428 1581 aa15.9■□□□□ 0.14
NIP7-202ENST00000254941 TRIM41Q8WV44 630 aa15.88■□□□□ 0.13
NIP7-202ENST00000254941 LAMC3Q9Y6N6 1575 aa15.84■□□□□ 0.13
NIP7-202ENST00000254941 WRNQ14191 1432 aaPredicted RBP eCLIP15.81■□□□□ 0.12
NIP7-202ENST00000254941 NESP48681 1621 aa15.79■□□□□ 0.12
NIP7-202ENST00000254941 SYNJ1O43426 1573 aa15.77■□□□□ 0.11
NIP7-202ENST00000254941 FANCD2Q9BXW9 1451 aa15.74■□□□□ 0.11
NIP7-202ENST00000254941 TOP2BQ02880 1626 aa15.73■□□□□ 0.11
NIP7-202ENST00000254941 BIVM-ERCC5R4GMW8 1640 aa15.73■□□□□ 0.11
NIP7-202ENST00000254941 CUX1P39880 1505 aa15.69■□□□□ 0.1
NIP7-202ENST00000254941 MSH5O43196 834 aa15.69■□□□□ 0.1
NIP7-202ENST00000254941 PDS5BQ9NTI5 1447 aa15.69■□□□□ 0.1
NIP7-202ENST00000254941 KIF21AQ7Z4S6 1674 aa15.66■□□□□ 0.1
NIP7-202ENST00000254941 CEP164Q9UPV0 1460 aa15.65■□□□□ 0.1
NIP7-202ENST00000254941 DNMBPQ6XZF7 1577 aa15.6■□□□□ 0.09
NIP7-202ENST00000254941 SOGA1O94964 1423 aa15.57■□□□□ 0.08
NIP7-202ENST00000254941 TOPBP1Q92547 1522 aa15.57■□□□□ 0.08
NIP7-202ENST00000254941 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
NIP7-202ENST00000254941 EEA1Q15075 1411 aa15.55■□□□□ 0.08
NIP7-202ENST00000254941 URB2Q14146 1524 aaKnown RBP15.55■□□□□ 0.08
NIP7-202ENST00000254941 FGD5Q6ZNL6 1462 aa15.53■□□□□ 0.08
NIP7-202ENST00000254941 RUSC2Q8N2Y8 1516 aa15.52■□□□□ 0.08
NIP7-202ENST00000254941 MRC2Q9UBG0 1479 aa15.49■□□□□ 0.07
NIP7-202ENST00000254941 LOC105371045A0A1W2PR82 267 aa15.48■□□□□ 0.07
NIP7-202ENST00000254941 POLA1P09884 1462 aaPredicted RBP15.48■□□□□ 0.07
NIP7-202ENST00000254941 ERCC6Q03468 1493 aa15.46■□□□□ 0.07
NIP7-202ENST00000254941 CSRNP3Q8WYN3 585 aa15.44■□□□□ 0.06
NIP7-202ENST00000254941 WDR62O43379 1518 aa15.43■□□□□ 0.06
NIP7-202ENST00000254941 KIF27Q86VH2 1401 aa15.42■□□□□ 0.06
NIP7-202ENST00000254941 THOC2Q8NI27 1593 aaKnown RBP15.41■□□□□ 0.06
NIP7-202ENST00000254941 ABCA10Q8WWZ4 1543 aa15.41■□□□□ 0.06
NIP7-202ENST00000254941 WDR97A6NE52 1622 aa15.4■□□□□ 0.06
NIP7-202ENST00000254941 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
NIP7-202ENST00000254941 CUX2O14529 1486 aa15.39■□□□□ 0.05
NIP7-202ENST00000254941 KIF21BO75037 1637 aa15.37■□□□□ 0.05
NIP7-202ENST00000254941 TARBP1Q13395 1621 aaKnown RBP15.37■□□□□ 0.05
NIP7-202ENST00000254941 GOLGA3Q08378 1498 aa15.31■□□□□ 0.04
NIP7-202ENST00000254941 ABCA5Q8WWZ7 1642 aa15.31■□□□□ 0.04
NIP7-202ENST00000254941 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
NIP7-202ENST00000254941 PRXQ9BXM0 1461 aa15.31■□□□□ 0.04
NIP7-202ENST00000254941 IGF1RP08069 1367 aa15.3■□□□□ 0.04
NIP7-202ENST00000254941 ERICH3Q5RHP9 1530 aa15.29■□□□□ 0.04
NIP7-202ENST00000254941 IFT140Q96RY7 1462 aa15.28■□□□□ 0.04
NIP7-202ENST00000254941 RAPGEF2Q9Y4G8 1499 aa15.27■□□□□ 0.03
NIP7-202ENST00000254941 GAPVD1Q14C86 1478 aa15.25■□□□□ 0.03
NIP7-202ENST00000254941 TDRD9Q8NDG6 1382 aaKnown RBP15.25■□□□□ 0.03
NIP7-202ENST00000254941 TNIKQ9UKE5 1360 aa15.25■□□□□ 0.03
NIP7-202ENST00000254941 CUL7Q14999 1698 aa15.23■□□□□ 0.03
NIP7-202ENST00000254941 UBTFP17480 764 aaKnown RBP15.22■□□□□ 0.03
NIP7-202ENST00000254941 CARMIL1Q5VZK9 1371 aa15.22■□□□□ 0.03
NIP7-202ENST00000254941 PBRM1Q86U86 1689 aa15.21■□□□□ 0.03
NIP7-202ENST00000254941 PIAS4Q8N2W9 510 aaPredicted RBP15.2■□□□□ 0.02
NIP7-202ENST00000254941 ZNF608Q9ULD9 1512 aaPredicted RBP15.19■□□□□ 0.02
NIP7-202ENST00000254941 AQRO60306 1485 aaKnown RBP eCLIP15.18■□□□□ 0.021e-8■■■□□ 17.1
NIP7-202ENST00000254941 EIF4G3O43432 1585 aaKnown RBP15.17■□□□□ 0.02
NIP7-202ENST00000254941 CEP162Q5TB80 1403 aa15.15■□□□□ 0.02
NIP7-202ENST00000254941 GRIN2BQ13224 1484 aa15.15■□□□□ 0.02
NIP7-202ENST00000254941 ADAMTS12P58397 1594 aa15.1■□□□□ 0.01
NIP7-202ENST00000254941 FHAD1B1AJZ9 1412 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms