Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
HTTP42858 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC30.52■■■□□ 2.48
HTTP42858 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
HTTP42858 GPX1-201ENST00000419349 1106 ntBASIC30.51■■■□□ 2.47
HTTP42858 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.49■■■□□ 2.47
HTTP42858 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
HTTP42858 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.49■■■□□ 2.47
HTTP42858 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.49■■■□□ 2.47
HTTP42858 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
HTTP42858 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
HTTP42858 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
HTTP42858 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
HTTP42858 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
HTTP42858 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
HTTP42858 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.45■■■□□ 2.46
HTTP42858 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
HTTP42858 NTF6A-201ENST00000591175 560 ntBASIC30.45■■■□□ 2.46
HTTP42858 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
HTTP42858 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.43■■■□□ 2.46
HTTP42858 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.43■■■□□ 2.46
HTTP42858 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.42■■■□□ 2.46
HTTP42858 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
HTTP42858 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
HTTP42858 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
HTTP42858 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
HTTP42858 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
HTTP42858 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
HTTP42858 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.38■■■□□ 2.45
HTTP42858 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
HTTP42858 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.37■■■□□ 2.45
HTTP42858 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
HTTP42858 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
HTTP42858 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.36■■■□□ 2.45
HTTP42858 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.36■■■□□ 2.45
HTTP42858 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC30.34■■■□□ 2.45
HTTP42858 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
HTTP42858 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.34■■■□□ 2.45
HTTP42858 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
HTTP42858 AC012354.3-201ENST00000623734 483 ntBASIC30.33■■■□□ 2.45
HTTP42858 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
HTTP42858 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
HTTP42858 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
HTTP42858 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
HTTP42858 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.29■■■□□ 2.44
HTTP42858 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.28■■■□□ 2.44
HTTP42858 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
HTTP42858 AC018358.1-201ENST00000631079 1402 ntBASIC30.27■■■□□ 2.44
HTTP42858 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
HTTP42858 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
HTTP42858 AC008813.1-201ENST00000536597 885 ntBASIC30.26■■■□□ 2.43
HTTP42858 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
HTTP42858 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.25■■■□□ 2.43
HTTP42858 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
HTTP42858 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
HTTP42858 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
HTTP42858 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.23■■■□□ 2.43
HTTP42858 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
HTTP42858 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.22■■■□□ 2.43
HTTP42858 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
HTTP42858 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.22■■■□□ 2.43
HTTP42858 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.21■■■□□ 2.43
HTTP42858 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.21■■■□□ 2.43
HTTP42858 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
HTTP42858 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.21■■■□□ 2.43
HTTP42858 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.21■■■□□ 2.43
HTTP42858 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.2■■■□□ 2.43
HTTP42858 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.2■■■□□ 2.43
HTTP42858 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
HTTP42858 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
HTTP42858 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.19■■■□□ 2.42
HTTP42858 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
HTTP42858 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.19■■■□□ 2.42
HTTP42858 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
HTTP42858 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
HTTP42858 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
HTTP42858 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.18■■■□□ 2.42
HTTP42858 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
HTTP42858 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
HTTP42858 AL033527.3-201ENST00000566366 1196 ntBASIC30.18■■■□□ 2.42
HTTP42858 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
HTTP42858 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.17■■■□□ 2.42
HTTP42858 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.16■■■□□ 2.42
HTTP42858 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
HTTP42858 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
HTTP42858 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
HTTP42858 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.12■■■□□ 2.41
HTTP42858 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.12■■■□□ 2.41
HTTP42858 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
HTTP42858 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
HTTP42858 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.09■■■□□ 2.41
HTTP42858 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
HTTP42858 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 190.8 ms