Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL1A1P02452 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL1A1P02452 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC32.23■■■□□ 2.75
COL1A1P02452 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL1A1P02452 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC32.22■■■□□ 2.75
COL1A1P02452 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC32.2■■■□□ 2.75
COL1A1P02452 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC32.2■■■□□ 2.75
COL1A1P02452 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL1A1P02452 RNF166-209ENST00000567844 633 ntTSL 5 BASIC32.19■■■□□ 2.74
COL1A1P02452 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL1A1P02452 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL1A1P02452 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
COL1A1P02452 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL1A1P02452 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL1A1P02452 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC32.16■■■□□ 2.74
COL1A1P02452 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL1A1P02452 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
COL1A1P02452 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC32.14■■■□□ 2.74
COL1A1P02452 MIR3648-2-201ENST00000581792 180 ntBASIC32.13■■■□□ 2.73
COL1A1P02452 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
COL1A1P02452 MIR3648-1-201ENST00000615959 180 ntBASIC32.13■■■□□ 2.73
COL1A1P02452 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.13■■■□□ 2.73
COL1A1P02452 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
COL1A1P02452 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
COL1A1P02452 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC32.11■■■□□ 2.73
COL1A1P02452 GDI1-215ENST00000630693 786 ntTSL 4 BASIC32.11■■■□□ 2.73
COL1A1P02452 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
COL1A1P02452 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC32.11■■■□□ 2.73
COL1A1P02452 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC32.11■■■□□ 2.73
COL1A1P02452 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC32.1■■■□□ 2.73
COL1A1P02452 AGPS-202ENST00000409888 815 ntTSL 4 BASIC32.1■■■□□ 2.73
COL1A1P02452 AC016575.1-201ENST00000607026 382 ntBASIC32.1■■■□□ 2.73
COL1A1P02452 LINC01971-201ENST00000617888 1048 ntBASIC32.1■■■□□ 2.73
COL1A1P02452 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
COL1A1P02452 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC32.09■■■□□ 2.73
COL1A1P02452 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC32.08■■■□□ 2.73
COL1A1P02452 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC32.08■■■□□ 2.73
COL1A1P02452 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
COL1A1P02452 CR559946.2-201ENST00000623684 991 ntBASIC32.07■■■□□ 2.72
COL1A1P02452 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
COL1A1P02452 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL1A1P02452 CALM3-209ENST00000597743 577 ntTSL 4 BASIC32.06■■■□□ 2.72
COL1A1P02452 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC32.05■■■□□ 2.72
COL1A1P02452 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
COL1A1P02452 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
COL1A1P02452 DUX4L11-201ENST00000611504 1267 ntBASIC32.03■■■□□ 2.72
COL1A1P02452 DUX4L12-201ENST00000614593 1267 ntBASIC32.03■■■□□ 2.72
COL1A1P02452 DUX4L14-201ENST00000621227 1267 ntBASIC32.03■■■□□ 2.72
COL1A1P02452 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL1A1P02452 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.02■■■□□ 2.72
COL1A1P02452 AC010864.1-201ENST00000609407 1511 ntBASIC32.02■■■□□ 2.72
COL1A1P02452 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL1A1P02452 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
COL1A1P02452 HSD17B1P1-201ENST00000590052 955 ntBASIC32.01■■■□□ 2.71
COL1A1P02452 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC32■■■□□ 2.71
COL1A1P02452 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
COL1A1P02452 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL1A1P02452 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.97■■■□□ 2.71
COL1A1P02452 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
COL1A1P02452 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL1A1P02452 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
COL1A1P02452 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.95■■■□□ 2.7
COL1A1P02452 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.94■■■□□ 2.7
COL1A1P02452 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
COL1A1P02452 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
COL1A1P02452 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL1A1P02452 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.92■■■□□ 2.7
COL1A1P02452 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.92■■■□□ 2.7
COL1A1P02452 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
COL1A1P02452 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.92■■■□□ 2.7
COL1A1P02452 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
COL1A1P02452 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL1A1P02452 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.91■■■□□ 2.7
COL1A1P02452 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL1A1P02452 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
COL1A1P02452 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.89■■■□□ 2.69
COL1A1P02452 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL1A1P02452 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
COL1A1P02452 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL1A1P02452 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.87■■■□□ 2.69
COL1A1P02452 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL1A1P02452 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
COL1A1P02452 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.87■■■□□ 2.69
COL1A1P02452 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL1A1P02452 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL1A1P02452 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.85■■■□□ 2.69
COL1A1P02452 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.85■■■□□ 2.69
COL1A1P02452 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL1A1P02452 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL1A1P02452 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.84■■■□□ 2.69
COL1A1P02452 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL1A1P02452 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL1A1P02452 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL1A1P02452 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL1A1P02452 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL1A1P02452 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL1A1P02452 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL1A1P02452 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.79■■■□□ 2.68
COL1A1P02452 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL1A1P02452 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms