Protein–RNA interactions for Protein: O15371

EIF3D, Eukaryotic translation initiation factor 3 subunit D, humanhuman

Known RBP eCLIP

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3DO15371 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.64■■□□□ 1.223e-6■■■□□ 18.1
EIF3DO15371 PDE9A-225ENST00000490803 1865 ntTSL 1 (best)20.98■□□□□ 0.953e-6■■■□□ 18.1
EIF3DO15371 PDE9A-227ENST00000495521 1565 ntTSL 1 (best)20.94■□□□□ 0.943e-6■■■□□ 18.1
EIF3DO15371 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.37■□□□□ 0.853e-6■■■□□ 18.1
EIF3DO15371 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.36■□□□□ 0.853e-6■■■□□ 18.1
EIF3DO15371 PDE9A-215ENST00000460989 1521 ntTSL 1 (best)20.26■□□□□ 0.833e-6■■■□□ 18.1
EIF3DO15371 PDE9A-216ENST00000462571 1784 ntTSL 1 (best)20.25■□□□□ 0.833e-6■■■□□ 18.1
EIF3DO15371 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.25■□□□□ 0.833e-6■■■□□ 18.1
EIF3DO15371 PDE9A-221ENST00000470987 1954 ntTSL 1 (best)20.14■□□□□ 0.813e-6■■■□□ 18.1
EIF3DO15371 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.2■□□□□ 0.663e-6■■■□□ 18.1
EIF3DO15371 PDE9A-220ENST00000468805 1721 ntTSL 1 (best)19.2■□□□□ 0.663e-6■■■□□ 18.1
EIF3DO15371 PDE9A-228ENST00000497805 1908 ntTSL 1 (best)18.59■□□□□ 0.573e-6■■■□□ 18.1
EIF3DO15371 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.45■□□□□ 0.543e-6■■■□□ 18.1
EIF3DO15371 PDE9A-219ENST00000467403 1661 ntTSL 1 (best)16.81■□□□□ 0.283e-6■■■□□ 18.1
EIF3DO15371 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.08■□□□□ 0.163e-6■■■□□ 18.1
EIF3DO15371 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC14.62□□□□□ -0.073e-6■■■□□ 18.1
EIF3DO15371 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC13.44□□□□□ -0.263e-6■■■□□ 18.1
EIF3DO15371 PDE9A-211ENST00000398232 1885 ntTSL 1 (best) BASIC12.95□□□□□ -0.343e-6■■■□□ 18.1
EIF3DO15371 PDE9A-204ENST00000335512 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.613e-6■■■□□ 18.1
EIF3DO15371 PDE9A-210ENST00000398229 1684 ntTSL 1 (best) BASIC11.16□□□□□ -0.623e-6■■■□□ 18.1
EIF3DO15371 PDE9A-207ENST00000398224 1671 ntTSL 1 (best) BASIC11.16□□□□□ -0.623e-6■■■□□ 18.1
EIF3DO15371 PDE9A-222ENST00000472401 431 ntTSL 39.52□□□□□ -0.893e-6■■■□□ 18.1
EIF3DO15371 PDE9A-223ENST00000486902 794 ntTSL 29.52□□□□□ -0.893e-6■■■□□ 18.1
EIF3DO15371 VARS2-207ENST00000476162 2228 ntTSL 1 (best)17.51■□□□□ 0.395e-6■■■□□ 18.1
EIF3DO15371 VARS2-205ENST00000469358 3429 ntTSL 513□□□□□ -0.335e-6■■■□□ 18.1
EIF3DO15371 PKD1-207ENST00000471603 2505 ntTSL 514.42□□□□□ -0.11e-6■■■□□ 18.1
EIF3DO15371 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.22e-6■■■□□ 18
EIF3DO15371 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.42e-6■■■□□ 18
EIF3DO15371 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.76■□□□□ 0.759e-28■■■□□ 17.9
EIF3DO15371 HSPA4-204ENST00000615899 2204 ntTSL 5 BASIC14.42□□□□□ -0.19e-28■■■□□ 17.9
EIF3DO15371 HSPA4-201ENST00000304858 4825 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.369e-28■■■□□ 17.9
EIF3DO15371 VAV2-204ENST00000472905 506 ntTSL 318.04■□□□□ 0.481e-6■■■□□ 17.8
EIF3DO15371 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC14.08□□□□□ -0.165e-21■■■□□ 17.8
EIF3DO15371 HIST1H2BJ-203ENST00000607124 950 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.615e-21■■■□□ 17.8
EIF3DO15371 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.942e-6■■■□□ 17.7
EIF3DO15371 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.942e-6■■■□□ 17.7
EIF3DO15371 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.382e-6■■■□□ 17.7
EIF3DO15371 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.264e-9■■■□□ 17.6
EIF3DO15371 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.62□□□□□ -1.514e-9■■■□□ 17.6
EIF3DO15371 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.72□□□□□ -1.172e-9■■■□□ 17.5
EIF3DO15371 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.25e-7■■■□□ 17.5
EIF3DO15371 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.943e-6■■■□□ 17.5
EIF3DO15371 SBNO2-207ENST00000590176 561 ntTSL 420.6■□□□□ 0.893e-6■■■□□ 17.5
EIF3DO15371 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.533e-6■■■□□ 17.5
EIF3DO15371 UGGT1-204ENST00000430075 586 ntTSL 416.87■□□□□ 0.294e-13■■■□□ 17.5
EIF3DO15371 UGGT1-202ENST00000376723 6682 ntTSL 1 (best)16.1■□□□□ 0.174e-13■■■□□ 17.5
EIF3DO15371 UGGT1-205ENST00000438277 3113 ntTSL 1 (best)13.84□□□□□ -0.194e-13■■■□□ 17.5
EIF3DO15371 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.284e-13■■■□□ 17.5
EIF3DO15371 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.425e-8■■■□□ 17.4
EIF3DO15371 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.145e-8■■■□□ 17.4
EIF3DO15371 BRD2-212ENST00000482914 4834 ntTSL 1 (best)14.77□□□□□ -0.045e-8■■■□□ 17.4
EIF3DO15371 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)13.13□□□□□ -0.315e-8■■■□□ 17.4
EIF3DO15371 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.315e-8■■■□□ 17.4
EIF3DO15371 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.765e-8■■■□□ 17.4
EIF3DO15371 IDH1-206ENST00000451391 563 ntTSL 320.65■□□□□ 0.99e-8■■■□□ 17.2
EIF3DO15371 IDH1-204ENST00000417583 702 ntTSL 415.62■□□□□ 0.099e-8■■■□□ 17.2
EIF3DO15371 IDH1-207ENST00000462386 1614 ntTSL 214.35□□□□□ -0.119e-8■■■□□ 17.2
EIF3DO15371 IDH1-208ENST00000481557 556 ntTSL 213.14□□□□□ -0.319e-8■■■□□ 17.2
EIF3DO15371 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.439e-8■■■□□ 17.2
EIF3DO15371 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.325e-6■■■□□ 17.2
EIF3DO15371 CPSF1-205ENST00000531042 580 ntTSL 516.95■□□□□ 0.35e-6■■■□□ 17.2
EIF3DO15371 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.045e-6■■■□□ 17.2
EIF3DO15371 CERS2-203ENST00000361419 997 ntTSL 232.48■■■□□ 2.797e-9■■■□□ 17.2
EIF3DO15371 CERS2-202ENST00000345896 2170 ntTSL 232■■■□□ 2.717e-9■■■□□ 17.2
EIF3DO15371 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.574e-6■■■□□ 17.2
EIF3DO15371 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.47e-9■■■□□ 17.2
EIF3DO15371 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.167e-9■■■□□ 17.2
EIF3DO15371 CERS2-206ENST00000421609 738 ntTSL 327.58■■■□□ 2.017e-9■■■□□ 17.2
EIF3DO15371 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.94e-6■■■□□ 17.2
EIF3DO15371 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.334e-6■■■□□ 17.2
EIF3DO15371 CERS2-207ENST00000457392 545 ntTSL 323.23■■□□□ 1.317e-9■■■□□ 17.2
EIF3DO15371 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.217e-9■■■□□ 17.2
EIF3DO15371 WDR4-207ENST00000492742 2205 ntTSL 221.93■■□□□ 1.17e-9■■■□□ 17.2
EIF3DO15371 PRKAR1B-206ENST00000417852 651 ntTSL 220.91■□□□□ 0.944e-6■■■□□ 17.2
EIF3DO15371 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.824e-6■■■□□ 17.2
EIF3DO15371 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.694e-6■■■□□ 17.2
EIF3DO15371 PRKAR1B-207ENST00000430040 1006 ntTSL 318.58■□□□□ 0.564e-6■■■□□ 17.2
EIF3DO15371 PRKAR1B-205ENST00000414568 752 ntTSL 518.16■□□□□ 0.54e-6■■■□□ 17.2
EIF3DO15371 CERS2-210ENST00000558062 896 ntTSL 216.88■□□□□ 0.297e-9■■■□□ 17.2
EIF3DO15371 WDR4-205ENST00000476326 1977 ntTSL 1 (best)16.2■□□□□ 0.187e-9■■■□□ 17.2
EIF3DO15371 CERS2-211ENST00000559020 594 ntTSL 415.84■□□□□ 0.137e-9■■■□□ 17.2
EIF3DO15371 CERS2-204ENST00000368949 1002 ntTSL 515.39■□□□□ 0.057e-9■■■□□ 17.2
EIF3DO15371 CERS2-214ENST00000561294 1803 ntTSL 5 BASIC13.89□□□□□ -0.197e-9■■■□□ 17.2
EIF3DO15371 NME1-201ENST00000013034 796 ntTSL 3 BASIC11.81□□□□□ -0.528e-13■■■□□ 17.2
EIF3DO15371 NME1-205ENST00000465188 521 ntTSL 210.61□□□□□ -0.718e-13■■■□□ 17.2
EIF3DO15371 NME1-204ENST00000456492 510 ntTSL 25.14□□□□□ -1.598e-13■■■□□ 17.2
EIF3DO15371 EIF4G1-234ENST00000478291 564 ntTSL 216.88■□□□□ 0.293e-8■■■□□ 17.1
EIF3DO15371 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC9.02□□□□□ -0.972e-7■■■□□ 17.1
EIF3DO15371 BIRC6-206ENST00000465130 910 ntTSL 24.98□□□□□ -1.612e-6■■■□□ 17
EIF3DO15371 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.023e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.173e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.273e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.283e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-213ENST00000638800 7078 ntTSL 55.97□□□□□ -1.453e-6■■■□□ 16.9
EIF3DO15371 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.56□□□□□ -1.523e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-212ENST00000495527 8404 ntTSL 1 (best)5.21□□□□□ -1.583e-6■■■□□ 16.9
EIF3DO15371 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.583e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.663e-6■■■□□ 16.9
EIF3DO15371 ZC3H11A-215ENST00000640465 4365 ntTSL 1 (best)4.16□□□□□ -1.743e-6■■■□□ 16.9
EIF3DO15371 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.37■□□□□ 0.851e-7■■■□□ 16.9
Retrieved 100 of 4,069 protein–RNA pairs in 237.3 ms