Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV39A0A0B4J263 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV39A0A0B4J263 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV39A0A0B4J263 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV39A0A0B4J263 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
TRAV39A0A0B4J263 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV39A0A0B4J263 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV39A0A0B4J263 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV39A0A0B4J263 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
TRAV39A0A0B4J263 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV39A0A0B4J263 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV39A0A0B4J263 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV39A0A0B4J263 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.89■■□□□ 1.09
TRAV39A0A0B4J263 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAV39A0A0B4J263 AC010864.1-201ENST00000609407 1511 ntBASIC21.89■■□□□ 1.09
TRAV39A0A0B4J263 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV39A0A0B4J263 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAV39A0A0B4J263 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV39A0A0B4J263 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV39A0A0B4J263 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV39A0A0B4J263 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAV39A0A0B4J263 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV39A0A0B4J263 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
TRAV39A0A0B4J263 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV39A0A0B4J263 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV39A0A0B4J263 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV39A0A0B4J263 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.83■■□□□ 1.09
TRAV39A0A0B4J263 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
TRAV39A0A0B4J263 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV39A0A0B4J263 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV39A0A0B4J263 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRAV39A0A0B4J263 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
TRAV39A0A0B4J263 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV39A0A0B4J263 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV39A0A0B4J263 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.82■■□□□ 1.08
TRAV39A0A0B4J263 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.82■■□□□ 1.08
TRAV39A0A0B4J263 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV39A0A0B4J263 AL139393.2-201ENST00000608721 2025 ntBASIC21.82■■□□□ 1.08
TRAV39A0A0B4J263 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAV39A0A0B4J263 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV39A0A0B4J263 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
TRAV39A0A0B4J263 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV39A0A0B4J263 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV39A0A0B4J263 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TRAV39A0A0B4J263 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV39A0A0B4J263 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TRAV39A0A0B4J263 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV39A0A0B4J263 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.77■■□□□ 1.08
TRAV39A0A0B4J263 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV39A0A0B4J263 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV39A0A0B4J263 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV39A0A0B4J263 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV39A0A0B4J263 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.76■■□□□ 1.07
TRAV39A0A0B4J263 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV39A0A0B4J263 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV39A0A0B4J263 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV39A0A0B4J263 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV39A0A0B4J263 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
TRAV39A0A0B4J263 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV39A0A0B4J263 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV39A0A0B4J263 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV39A0A0B4J263 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.73■■□□□ 1.07
TRAV39A0A0B4J263 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV39A0A0B4J263 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV39A0A0B4J263 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV39A0A0B4J263 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV39A0A0B4J263 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV39A0A0B4J263 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV39A0A0B4J263 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
TRAV39A0A0B4J263 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.71■■□□□ 1.07
TRAV39A0A0B4J263 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.71■■□□□ 1.07
TRAV39A0A0B4J263 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 SUZ12P1-203ENST00000578195 985 ntBASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV39A0A0B4J263 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV39A0A0B4J263 MIR762-201ENST00000390236 83 ntBASIC21.69■■□□□ 1.06
TRAV39A0A0B4J263 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV39A0A0B4J263 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.69■■□□□ 1.06
TRAV39A0A0B4J263 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRAV39A0A0B4J263 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV39A0A0B4J263 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.68■■□□□ 1.06
TRAV39A0A0B4J263 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.68■■□□□ 1.06
TRAV39A0A0B4J263 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.68■■□□□ 1.06
TRAV39A0A0B4J263 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
TRAV39A0A0B4J263 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV39A0A0B4J263 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms