Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.651e-7■■■■□ 25.6
UPF1Q92900 HSPG2-211ENST00000486901 3586 ntTSL 211.85□□□□□ -0.511e-9■■■■□ 25.6
UPF1Q92900 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.11e-9■■■■□ 25.6
UPF1Q92900 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.022e-6■■■■□ 25.6
UPF1Q92900 CTBP1-214ENST00000514495 564 ntTSL 239.97■■■■□ 3.991e-6■■■■□ 25.6
UPF1Q92900 CACTIN-210ENST00000592721 1220 ntTSL 1 (best)32.65■■■□□ 2.821e-6■■■■□ 25.6
UPF1Q92900 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC31.29■■■□□ 2.61e-6■■■■□ 25.6
UPF1Q92900 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.521e-6■■■■□ 25.6
UPF1Q92900 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC30.62■■■□□ 2.491e-6■■■■□ 25.6
UPF1Q92900 MVB12A-202ENST00000524382 908 ntTSL 230.11■■■□□ 2.411e-6■■■■□ 25.6
UPF1Q92900 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC29.13■■■□□ 2.251e-6■■■■□ 25.6
UPF1Q92900 SLC39A3-205ENST00000589363 524 ntTSL 327.95■■■□□ 2.061e-6■■■■□ 25.6
UPF1Q92900 GNAI2-212ENST00000492383 989 ntTSL 227.86■■■□□ 2.051e-6■■■■□ 25.6
UPF1Q92900 MVB12A-213ENST00000594784 705 ntTSL 527.74■■■□□ 2.031e-6■■■■□ 25.6
UPF1Q92900 ERFE-204ENST00000479091 1416 ntTSL 1 (best)27.11■■□□□ 1.931e-6■■■■□ 25.6
UPF1Q92900 CTBP1-217ENST00000515399 985 ntTSL 327.08■■□□□ 1.931e-6■■■■□ 25.6
UPF1Q92900 CACTIN-208ENST00000591726 699 ntTSL 527.06■■□□□ 1.921e-6■■■■□ 25.6
UPF1Q92900 CTBP1-208ENST00000506180 843 ntTSL 526.9■■□□□ 1.91e-6■■■■□ 25.6
UPF1Q92900 MAGI1-205ENST00000464060 2247 ntTSL 1 (best)26.22■■□□□ 1.791e-6■■■■□ 25.6
UPF1Q92900 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.691e-6■■■■□ 25.6
UPF1Q92900 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC25.42■■□□□ 1.661e-6■■■■□ 25.6
UPF1Q92900 ERFE-203ENST00000473274 2307 ntTSL 1 (best)24.89■■□□□ 1.571e-6■■■■□ 25.6
UPF1Q92900 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC24.65■■□□□ 1.541e-6■■■■□ 25.6
UPF1Q92900 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.421e-6■■■■□ 25.6
UPF1Q92900 RCN3-205ENST00000598833 607 ntTSL 323.66■■□□□ 1.381e-6■■■■□ 25.6
UPF1Q92900 RCN3-202ENST00000593483 595 ntTSL 522.91■■□□□ 1.261e-6■■■■□ 25.6
UPF1Q92900 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC22.71■■□□□ 1.231e-6■■■■□ 25.6
UPF1Q92900 RAD51D-209ENST00000586044 1571 ntTSL 1 (best)22.56■■□□□ 1.21e-6■■■■□ 25.6
UPF1Q92900 CTBP1-213ENST00000514210 856 ntTSL 221.83■■□□□ 1.091e-6■■■■□ 25.6
UPF1Q92900 CTBP1-212ENST00000513420 704 ntTSL 321.58■■□□□ 1.051e-6■■■■□ 25.6
UPF1Q92900 RAD51D-216ENST00000588594 1409 ntTSL 221.39■■□□□ 1.021e-6■■■■□ 25.6
UPF1Q92900 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 11e-6■■■■□ 25.6
UPF1Q92900 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.75■□□□□ 0.911e-17■■■■□ 25.6
UPF1Q92900 ERFE-201ENST00000344233 612 ntAPPRIS ALT2 TSL 320.62■□□□□ 0.891e-6■■■■□ 25.6
UPF1Q92900 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.71e-6■■■■□ 25.6
UPF1Q92900 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.681e-6■■■■□ 25.6
UPF1Q92900 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.93■□□□□ 0.621e-6■■■■□ 25.6
UPF1Q92900 ALG10-202ENST00000538927 571 ntTSL 5 BASIC18.49■□□□□ 0.551e-6■■■■□ 25.6
UPF1Q92900 INPP5A-205ENST00000445580 610 ntTSL 518.44■□□□□ 0.541e-6■■■■□ 25.6
UPF1Q92900 MOCS1-202ENST00000373181 1527 ntTSL 1 (best)18.23■□□□□ 0.511e-6■■■■□ 25.6
UPF1Q92900 CACTIN-204ENST00000585942 2810 ntTSL 1 (best)17.97■□□□□ 0.471e-6■■■■□ 25.6
UPF1Q92900 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.451e-6■■■■□ 25.6
UPF1Q92900 ERFE-202ENST00000357303 2012 ntAPPRIS ALT2 TSL 1 (best)17.7■□□□□ 0.421e-6■■■■□ 25.6
UPF1Q92900 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.181e-6■■■■□ 25.6
UPF1Q92900 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.111e-6■■■■□ 25.6
UPF1Q92900 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.091e-6■■■■□ 25.6
UPF1Q92900 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.16■□□□□ 0.021e-6■■■■□ 25.6
UPF1Q92900 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.041e-6■■■■□ 25.6
UPF1Q92900 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.041e-6■■■■□ 25.6
UPF1Q92900 SLC39A3-204ENST00000589166 491 ntTSL 214.66□□□□□ -0.061e-6■■■■□ 25.6
UPF1Q92900 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.32□□□□□ -0.121e-6■■■■□ 25.6
UPF1Q92900 STAG3L4-202ENST00000416602 2143 ntTSL 2 BASIC13.77□□□□□ -0.211e-6■■■■□ 25.6
UPF1Q92900 ZSCAN30-202ENST00000420878 4323 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.31e-6■■■■□ 25.6
UPF1Q92900 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC12.86□□□□□ -0.351e-6■■■■□ 25.6
UPF1Q92900 KHNYN-204ENST00000556255 2198 ntTSL 212.57□□□□□ -0.41e-7■■■■□ 25.6
UPF1Q92900 AC011476.3-201ENST00000593060 786 ntTSL 5 BASIC12.01□□□□□ -0.491e-6■■■■□ 25.6
UPF1Q92900 MOCS1-203ENST00000373186 4256 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-6■■■■□ 25.6
UPF1Q92900 ZSCAN30-211ENST00000610712 3439 ntTSL 4 BASIC10.53□□□□□ -0.721e-6■■■■□ 25.6
UPF1Q92900 ZSCAN30-201ENST00000333206 4097 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.741e-6■■■■□ 25.6
UPF1Q92900 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC9.75□□□□□ -0.851e-6■■■■□ 25.6
UPF1Q92900 TTC26-202ENST00000430935 4198 ntTSL 1 (best) BASIC8.36□□□□□ -1.071e-6■■■■□ 25.6
UPF1Q92900 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.171e-6■■■■□ 25.6
UPF1Q92900 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.271e-6■■■■□ 25.6
UPF1Q92900 ZNF740-203ENST00000551514 377 ntTSL 37.11□□□□□ -1.273e-8■■■■□ 25.6
UPF1Q92900 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC12.06□□□□□ -0.485e-7■■■■□ 25.6
UPF1Q92900 ANAPC16-201ENST00000299381 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.396e-7■■■■□ 25.6
UPF1Q92900 ANAPC16-204ENST00000615507 3100 ntTSL 3 BASIC12.01□□□□□ -0.496e-7■■■■□ 25.6
UPF1Q92900 ANAPC16-205ENST00000621663 3567 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.646e-7■■■■□ 25.6
UPF1Q92900 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.043e-9■■■■□ 25.6
UPF1Q92900 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.031e-6■■■■□ 25.6
UPF1Q92900 LRP5-206ENST00000529993 5103 ntTSL 1 (best)14.91□□□□□ -0.021e-6■■■■□ 25.6
UPF1Q92900 SND1-214ENST00000489417 1447 ntTSL 225.63■■□□□ 1.692e-7■■■■□ 25.6
UPF1Q92900 SND1-201ENST00000354725 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.362e-7■■■■□ 25.6
UPF1Q92900 AL365181.3-201ENST00000605886 3222 ntBASIC15.95■□□□□ 0.143e-10■■■■□ 25.6
UPF1Q92900 DKKL1-203ENST00000596402 775 ntAPPRIS ALT2 TSL 322.36■■□□□ 1.171e-6■■■■□ 25.6
UPF1Q92900 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.121e-6■■■■□ 25.6
UPF1Q92900 DKKL1-204ENST00000597546 664 ntAPPRIS ALT2 TSL 220.35■□□□□ 0.851e-6■■■■□ 25.6
UPF1Q92900 DKKL1-205ENST00000597873 767 ntAPPRIS ALT2 TSL 319.73■□□□□ 0.751e-6■■■■□ 25.6
UPF1Q92900 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.361e-6■■■■□ 25.6
UPF1Q92900 DKKL1-206ENST00000598682 500 ntAPPRIS ALT2 TSL 215.84■□□□□ 0.131e-6■■■■□ 25.6
UPF1Q92900 C19orf54-205ENST00000596809 1104 ntTSL 530.95■■■□□ 2.559e-12■■■■□ 25.6
UPF1Q92900 HDGF-205ENST00000469145 844 ntTSL 226.89■■□□□ 1.93e-23■■■■□ 25.6
UPF1Q92900 AC107871.1-204ENST00000638026 2895 ntTSL 1 (best)11.05□□□□□ -0.646e-9■■■■□ 25.6
UPF1Q92900 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.054e-14■■■■□ 25.6
UPF1Q92900 DDB1-203ENST00000451943 1224 ntTSL 211.06□□□□□ -0.644e-14■■■■□ 25.6
UPF1Q92900 SMG6-207ENST00000570756 2426 ntTSL 316.26■□□□□ 0.192e-7■■■■□ 25.6
UPF1Q92900 SMG6-201ENST00000263073 5960 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.532e-7■■■■□ 25.6
UPF1Q92900 SMG6-213ENST00000573166 4236 ntTSL 1 (best)11.55□□□□□ -0.562e-7■■■■□ 25.6
UPF1Q92900 SMG6-202ENST00000354901 3473 ntTSL 1 (best) BASIC9.7□□□□□ -0.862e-7■■■■□ 25.6
UPF1Q92900 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.431e-8■■■■□ 25.6
UPF1Q92900 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.56■□□□□ 0.727e-8■■■■□ 25.6
UPF1Q92900 PSMF1-204ENST00000381898 642 ntTSL 318.73■□□□□ 0.597e-8■■■■□ 25.6
UPF1Q92900 PSMF1-202ENST00000333082 3686 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.747e-8■■■■□ 25.6
UPF1Q92900 PSMF1-203ENST00000335877 4290 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.867e-8■■■■□ 25.6
UPF1Q92900 PSMF1-210ENST00000484891 4030 ntTSL 28.43□□□□□ -1.067e-8■■■■□ 25.6
UPF1Q92900 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC19.95■□□□□ 0.783e-8■■■■□ 25.6
UPF1Q92900 GRPEL1-202ENST00000504920 2195 ntTSL 218.42■□□□□ 0.542e-6■■■■□ 25.5
UPF1Q92900 GRPEL1-201ENST00000264954 2775 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.362e-6■■■■□ 25.5
UPF1Q92900 STK35-202ENST00000493263 1595 ntTSL 1 (best)25.77■■□□□ 1.721e-6■■■■□ 25.5
UPF1Q92900 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.121e-6■■■■□ 25.5
Retrieved 100 of 15,879 protein–RNA pairs in 140.3 ms