RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 NISCHQ9Y2I1 1504 aa20.33■□□□□ 0.84
SMG6-213ENST00000573166 DCAF8L2P0C7V8 631 aa19.04■□□□□ 0.64
SMG6-213ENST00000573166 SHROOM4Q9ULL8 1493 aa17.92■□□□□ 0.46
SMG6-213ENST00000573166 SUPT5HO00267 1087 aaKnown RBP17.63■□□□□ 0.41
SMG6-213ENST00000573166 ABCC9O60706 1549 aa17.56■□□□□ 0.4
SMG6-213ENST00000573166 CCDC180Q9P1Z9 1646 aa17.23■□□□□ 0.35
SMG6-213ENST00000573166 PABPN1Q86U42 306 aaKnown RBP eCLIP16.99■□□□□ 0.31
SMG6-213ENST00000573166 ZCCHC6Q5VYS8 1495 aaKnown RBP16.86■□□□□ 0.29
SMG6-213ENST00000573166 SCRIBQ14160 1630 aa16.61■□□□□ 0.25
SMG6-213ENST00000573166 RB1CC1Q8TDY2 1594 aa16.6■□□□□ 0.25
SMG6-213ENST00000573166 EHMT2Q96KQ7 1210 aa16.6■□□□□ 0.25
SMG6-213ENST00000573166 NACADO15069 1562 aa16.53■□□□□ 0.24
SMG6-213ENST00000573166 FAM9AQ8IZU1 332 aaPredicted RBP16.48■□□□□ 0.23
SMG6-213ENST00000573166 TRIM41Q8WV44 630 aa16.45■□□□□ 0.22
SMG6-213ENST00000573166 DCAF1Q9Y4B6 1507 aa16.36■□□□□ 0.21
SMG6-213ENST00000573166 RANGAP1P46060 587 aaPredicted RBP16.14■□□□□ 0.17
SMG6-213ENST00000573166 MYO15BQ96JP2 1530 aa16.12■□□□□ 0.17
SMG6-213ENST00000573166 UBTFP17480 764 aaKnown RBP16.07■□□□□ 0.16
SMG6-213ENST00000573166 CHIC1Q5VXU3 224 aa16.05■□□□□ 0.16
SMG6-213ENST00000573166 APLP2Q06481 763 aa16.05■□□□□ 0.16
SMG6-213ENST00000573166 RSF1Q96T23 1441 aaPredicted RBP15.95■□□□□ 0.14
SMG6-213ENST00000573166 CECR2Q9BXF3 1484 aa15.94■□□□□ 0.14
SMG6-213ENST00000573166 ATP1B4Q9UN42 357 aaPredicted RBP15.9■□□□□ 0.14
SMG6-213ENST00000573166 BAZ1AQ9NRL2 1556 aaPredicted RBP15.86■□□□□ 0.13
SMG6-213ENST00000573166 TTBK1Q5TCY1 1321 aaPredicted RBP15.86■□□□□ 0.13
SMG6-213ENST00000573166 BAZ1BQ9UIG0 1483 aaKnown RBP15.83■□□□□ 0.13
SMG6-213ENST00000573166 LOC105371045A0A1W2PR82 267 aa15.76■□□□□ 0.11
SMG6-213ENST00000573166 MROH2BQ7Z745 1585 aa15.73■□□□□ 0.11
SMG6-213ENST00000573166 FBLN2P98095 1184 aa15.69■□□□□ 0.1
SMG6-213ENST00000573166 SMARCA2P51531 1590 aa15.61■□□□□ 0.09
SMG6-213ENST00000573166 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.59■□□□□ 0.09
SMG6-213ENST00000573166 HNRNPUL2Q1KMD3 747 aaKnown RBP15.59■□□□□ 0.09
SMG6-213ENST00000573166 PPARGC1BQ86YN6 1023 aaKnown RBP15.55■□□□□ 0.08
SMG6-213ENST00000573166 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
SMG6-213ENST00000573166 ATAD2BQ9ULI0 1458 aa15.53■□□□□ 0.08
SMG6-213ENST00000573166 SMARCA4P51532 1647 aa15.5■□□□□ 0.07
SMG6-213ENST00000573166 WIZO95785 1651 aa15.49■□□□□ 0.07
SMG6-213ENST00000573166 PCGF6Q9BYE7 350 aa15.49■□□□□ 0.07
SMG6-213ENST00000573166 ERCC6Q03468 1493 aa15.48■□□□□ 0.07
SMG6-213ENST00000573166 CCDC88BA6NC98 1476 aa15.46■□□□□ 0.07
SMG6-213ENST00000573166 EIF4G1Q04637 1599 aaKnown RBP15.42■□□□□ 0.06
SMG6-213ENST00000573166 WRNQ14191 1432 aaPredicted RBP eCLIP15.42■□□□□ 0.061e-6■■■■■ 58.5
SMG6-213ENST00000573166 TOP2AP11388 1531 aaKnown RBP15.4■□□□□ 0.06
SMG6-213ENST00000573166 BICRAQ9NZM4 1560 aa15.37■□□□□ 0.05
SMG6-213ENST00000573166 P3H3Q8IVL6 736 aa15.37■□□□□ 0.05
SMG6-213ENST00000573166 CADPSQ9ULU8 1353 aa15.35■□□□□ 0.05
SMG6-213ENST00000573166 PDS5BQ9NTI5 1447 aa15.34■□□□□ 0.05
SMG6-213ENST00000573166 CHMP7Q8WUX9 453 aaPredicted RBP15.32■□□□□ 0.04
SMG6-213ENST00000573166 NCAPD3P42695 1498 aa15.31■□□□□ 0.04
SMG6-213ENST00000573166 ITGAEP38570 1179 aa15.28■□□□□ 0.04
SMG6-213ENST00000573166 MYT1LQ9UL68 1186 aa15.28■□□□□ 0.04
SMG6-213ENST00000573166 ARID3CA6NKF2 412 aa15.24■□□□□ 0.03
SMG6-213ENST00000573166 DNAJC5BQ9UF47 199 aa15.23■□□□□ 0.03
SMG6-213ENST00000573166 CC2D2AQ9P2K1 1620 aa15.23■□□□□ 0.03
SMG6-213ENST00000573166 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
SMG6-213ENST00000573166 UNC13AQ9UPW8 1703 aa15.19■□□□□ 0.02
SMG6-213ENST00000573166 CCER1Q8TC90 406 aaPredicted RBP15.18■□□□□ 0.02
SMG6-213ENST00000573166 TRIM26Q12899 539 aaPredicted RBP15.17■□□□□ 0.02
SMG6-213ENST00000573166 ABCC8Q09428 1581 aa15.17■□□□□ 0.02
SMG6-213ENST00000573166 EEA1Q15075 1411 aa15.16■□□□□ 0.02
SMG6-213ENST00000573166 CUX2O14529 1486 aa15.13■□□□□ 0.01
SMG6-213ENST00000573166 CEP164Q9UPV0 1460 aa15.13■□□□□ 0.01
SMG6-213ENST00000573166 FANCD2Q9BXW9 1451 aa15.13■□□□□ 0.01
SMG6-213ENST00000573166 SOGA1O94964 1423 aa15.11■□□□□ 0.01
SMG6-213ENST00000573166 HRCP23327 699 aa15.11■□□□□ 0.01
SMG6-213ENST00000573166 FAM50AQ14320 339 aaKnown RBP15.1■□□□□ 0.01
SMG6-213ENST00000573166 TDRD9Q8NDG6 1382 aaKnown RBP15.1■□□□□ 0.01
SMG6-213ENST00000573166 HMGXB3Q12766 1538 aa15.06■□□□□ 0
SMG6-213ENST00000573166 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
SMG6-213ENST00000573166 CDK11AQ9UQ88 783 aaPredicted RBP15.06■□□□□ 0
SMG6-213ENST00000573166 CARMIL1Q5VZK9 1371 aa15.03■□□□□ -0
SMG6-213ENST00000573166 GOLGA3Q08378 1498 aa15.02■□□□□ -0
SMG6-213ENST00000573166 NESP48681 1621 aa15.01□□□□□ -0.01
SMG6-213ENST00000573166 CLIP1P30622 1438 aa14.99□□□□□ -0.01
SMG6-213ENST00000573166 CFTRP13569 1480 aa14.97□□□□□ -0.01
SMG6-213ENST00000573166 ZNF777Q9ULD5 760 aaPredicted RBP14.95□□□□□ -0.02
SMG6-213ENST00000573166 ZEB1P37275 1124 aaPredicted RBP14.91□□□□□ -0.02
SMG6-213ENST00000573166 TNIKQ9UKE5 1360 aa14.9□□□□□ -0.02
SMG6-213ENST00000573166 CEP162Q5TB80 1403 aa14.89□□□□□ -0.03
SMG6-213ENST00000573166 FGD5Q6ZNL6 1462 aa14.87□□□□□ -0.03
SMG6-213ENST00000573166 TRIM52Q96A61 297 aa14.86□□□□□ -0.03
SMG6-213ENST00000573166 PEG3Q9GZU2 1588 aa14.86□□□□□ -0.03
SMG6-213ENST00000573166 MTUS2Q5JR59 1369 aa14.84□□□□□ -0.03
SMG6-213ENST00000573166 RAD54L2Q9Y4B4 1467 aa14.84□□□□□ -0.03
SMG6-213ENST00000573166 KCNH8Q96L42 1107 aa14.83□□□□□ -0.04
SMG6-213ENST00000573166 PLEKHD1A6NEE1 506 aa14.81□□□□□ -0.04
SMG6-213ENST00000573166 RUSC2Q8N2Y8 1516 aa14.79□□□□□ -0.04
SMG6-213ENST00000573166 MRC2Q9UBG0 1479 aa14.79□□□□□ -0.04
SMG6-213ENST00000573166 GAPVD1Q14C86 1478 aa14.76□□□□□ -0.05
SMG6-213ENST00000573166 AQRO60306 1485 aaKnown RBP eCLIP14.76□□□□□ -0.05
SMG6-213ENST00000573166 RAPGEF2Q9Y4G8 1499 aa14.76□□□□□ -0.05
SMG6-213ENST00000573166 LAMC3Q9Y6N6 1575 aa14.75□□□□□ -0.05
SMG6-213ENST00000573166 TOPBP1Q92547 1522 aa14.73□□□□□ -0.05
SMG6-213ENST00000573166 JPH4Q96JJ6 628 aa14.73□□□□□ -0.05
SMG6-213ENST00000573166 IGF1RP08069 1367 aa14.73□□□□□ -0.05
SMG6-213ENST00000573166 CARMIL2Q6F5E8 1435 aa14.72□□□□□ -0.05
SMG6-213ENST00000573166 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
SMG6-213ENST00000573166 CHIC2Q9UKJ5 165 aa14.68□□□□□ -0.06
SMG6-213ENST00000573166 SYNJ1O43426 1573 aa14.68□□□□□ -0.06
SMG6-213ENST00000573166 FHAD1B1AJZ9 1412 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms