RNA–Protein interactions for RNA: ENST00000354725.7

SND1-201, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SND1, Length 3,476 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-201ENST00000354725 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
SND1-201ENST00000354725 CCDC180Q9P1Z9 1646 aa21.02■□□□□ 0.96
SND1-201ENST00000354725 ABCC9O60706 1549 aa19.99■□□□□ 0.79
SND1-201ENST00000354725 ZCCHC6Q5VYS8 1495 aaKnown RBP19.75■□□□□ 0.75
SND1-201ENST00000354725 MYO15BQ96JP2 1530 aa19.67■□□□□ 0.74
SND1-201ENST00000354725 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
SND1-201ENST00000354725 NACADO15069 1562 aa19.57■□□□□ 0.72
SND1-201ENST00000354725 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
SND1-201ENST00000354725 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
SND1-201ENST00000354725 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.65
SND1-201ENST00000354725 DCAF8L2P0C7V8 631 aa19.01■□□□□ 0.63
SND1-201ENST00000354725 SCRIBQ14160 1630 aa18.98■□□□□ 0.63
SND1-201ENST00000354725 SLC24A1O60721 1099 aa18.98■□□□□ 0.63
SND1-201ENST00000354725 PELP1Q8IZL8 1130 aaKnown RBP18.89■□□□□ 0.61
SND1-201ENST00000354725 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
SND1-201ENST00000354725 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
SND1-201ENST00000354725 MYT1Q01538 1121 aa18.53■□□□□ 0.56
SND1-201ENST00000354725 EIF4G1Q04637 1599 aaKnown RBP18.42■□□□□ 0.54
SND1-201ENST00000354725 CECR2Q9BXF3 1484 aa18.31■□□□□ 0.52
SND1-201ENST00000354725 PRKCSHP14314 528 aaPredicted RBP18.31■□□□□ 0.52
SND1-201ENST00000354725 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
SND1-201ENST00000354725 CC2D2AQ9P2K1 1620 aa18.29■□□□□ 0.52
SND1-201ENST00000354725 PEG3Q9GZU2 1588 aa18.24■□□□□ 0.51
SND1-201ENST00000354725 DNAJC5BQ9UF47 199 aa18.24■□□□□ 0.51
SND1-201ENST00000354725 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
SND1-201ENST00000354725 MROH2BQ7Z745 1585 aa18.17■□□□□ 0.5
SND1-201ENST00000354725 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
SND1-201ENST00000354725 NCAPD3P42695 1498 aa18.04■□□□□ 0.48
SND1-201ENST00000354725 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
SND1-201ENST00000354725 SMARCA2P51531 1590 aa18.03■□□□□ 0.48
SND1-201ENST00000354725 WIZO95785 1651 aa18.02■□□□□ 0.48
SND1-201ENST00000354725 RSF1Q96T23 1441 aaPredicted RBP18■□□□□ 0.47
SND1-201ENST00000354725 TOP2AP11388 1531 aaKnown RBP17.83■□□□□ 0.45
SND1-201ENST00000354725 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
SND1-201ENST00000354725 SUPT5HO00267 1087 aaKnown RBP17.82■□□□□ 0.44
SND1-201ENST00000354725 TTBK1Q5TCY1 1321 aaPredicted RBP17.77■□□□□ 0.44
SND1-201ENST00000354725 HRCP23327 699 aa17.73■□□□□ 0.43
SND1-201ENST00000354725 CHIC1Q5VXU3 224 aa17.72■□□□□ 0.43
SND1-201ENST00000354725 ERICH6Q7L0X2 663 aa17.7■□□□□ 0.42
SND1-201ENST00000354725 PRDM2Q13029 1718 aa17.58■□□□□ 0.4
SND1-201ENST00000354725 CCDC88BA6NC98 1476 aa17.56■□□□□ 0.4
SND1-201ENST00000354725 LAMC3Q9Y6N6 1575 aa17.54■□□□□ 0.4
SND1-201ENST00000354725 APLP2Q06481 763 aa17.48■□□□□ 0.39
SND1-201ENST00000354725 NESP48681 1621 aa17.47■□□□□ 0.39
SND1-201ENST00000354725 CFTRP13569 1480 aa17.47■□□□□ 0.39
SND1-201ENST00000354725 DAXXQ9UER7 740 aaPredicted RBP17.46■□□□□ 0.39
SND1-201ENST00000354725 KIF21AQ7Z4S6 1674 aa17.42■□□□□ 0.38
SND1-201ENST00000354725 CADPSQ9ULU8 1353 aa17.41■□□□□ 0.38
SND1-201ENST00000354725 SCAF1Q9H7N4 1312 aaKnown RBP17.4■□□□□ 0.38
SND1-201ENST00000354725 THOC2Q8NI27 1593 aaKnown RBP17.35■□□□□ 0.37
SND1-201ENST00000354725 PPARGC1BQ86YN6 1023 aaKnown RBP17.24■□□□□ 0.35
SND1-201ENST00000354725 PDS5BQ9NTI5 1447 aa17.23■□□□□ 0.35
SND1-201ENST00000354725 FANCD2Q9BXW9 1451 aa17.22■□□□□ 0.35
SND1-201ENST00000354725 WDR62O43379 1518 aa17.21■□□□□ 0.35
SND1-201ENST00000354725 EHMT2Q96KQ7 1210 aa17.19■□□□□ 0.34
SND1-201ENST00000354725 CEP164Q9UPV0 1460 aa17.16■□□□□ 0.34
SND1-201ENST00000354725 URB2Q14146 1524 aaKnown RBP17.15■□□□□ 0.34
SND1-201ENST00000354725 MRC2Q9UBG0 1479 aa17.14■□□□□ 0.33
SND1-201ENST00000354725 BCL11AQ9H165 835 aa17.13■□□□□ 0.33
SND1-201ENST00000354725 ERCC6Q03468 1493 aa17.11■□□□□ 0.33
SND1-201ENST00000354725 PLPPR3Q6T4P5 718 aa17.1■□□□□ 0.33
SND1-201ENST00000354725 CUX2O14529 1486 aa17.09■□□□□ 0.33
SND1-201ENST00000354725 PCGF6Q9BYE7 350 aa17.08■□□□□ 0.33
SND1-201ENST00000354725 DNMBPQ6XZF7 1577 aa17.08■□□□□ 0.32
SND1-201ENST00000354725 BIVM-ERCC5R4GMW8 1640 aa17.07■□□□□ 0.32
SND1-201ENST00000354725 EIF5BO60841 1220 aaKnown RBP17.06■□□□□ 0.32
SND1-201ENST00000354725 CUX1P39880 1505 aa17.05■□□□□ 0.32
SND1-201ENST00000354725 TOPBP1Q92547 1522 aa17.03■□□□□ 0.32
SND1-201ENST00000354725 LOC105371045A0A1W2PR82 267 aa17.01■□□□□ 0.31
SND1-201ENST00000354725 TOP2BQ02880 1626 aa17■□□□□ 0.31
SND1-201ENST00000354725 WDR97A6NE52 1622 aa16.99■□□□□ 0.31
SND1-201ENST00000354725 ABCC8Q09428 1581 aa16.99■□□□□ 0.31
SND1-201ENST00000354725 SYNJ1O43426 1573 aa16.99■□□□□ 0.31
SND1-201ENST00000354725 TARBP1Q13395 1621 aaKnown RBP16.99■□□□□ 0.31
SND1-201ENST00000354725 PLEKHG5O94827 1062 aa16.99■□□□□ 0.31
SND1-201ENST00000354725 FAM9AQ8IZU1 332 aaPredicted RBP16.93■□□□□ 0.3
SND1-201ENST00000354725 TRIM26Q12899 539 aaPredicted RBP16.92■□□□□ 0.3
SND1-201ENST00000354725 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
SND1-201ENST00000354725 FGD5Q6ZNL6 1462 aa16.86■□□□□ 0.29
SND1-201ENST00000354725 WRNQ14191 1432 aaPredicted RBP eCLIP16.85■□□□□ 0.296e-6■■■■■ 29.7
SND1-201ENST00000354725 IFT140Q96RY7 1462 aa16.83■□□□□ 0.29
SND1-201ENST00000354725 ABCA5Q8WWZ7 1642 aa16.8■□□□□ 0.28
SND1-201ENST00000354725 EIF4G3O43432 1585 aaKnown RBP16.79■□□□□ 0.28
SND1-201ENST00000354725 RTN4Q9NQC3 1192 aaKnown RBP16.78■□□□□ 0.28
SND1-201ENST00000354725 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
SND1-201ENST00000354725 RAD54L2Q9Y4B4 1467 aa16.77■□□□□ 0.27
SND1-201ENST00000354725 ZNF608Q9ULD9 1512 aaPredicted RBP16.76■□□□□ 0.27
SND1-201ENST00000354725 PBRM1Q86U86 1689 aa16.73■□□□□ 0.27
SND1-201ENST00000354725 SOGA1O94964 1423 aa16.71■□□□□ 0.27
SND1-201ENST00000354725 TRIM41Q8WV44 630 aa16.71■□□□□ 0.26
SND1-201ENST00000354725 CENPBP07199 599 aaPredicted RBP16.68■□□□□ 0.26
SND1-201ENST00000354725 ACIN1Q9UKV3 1341 aaKnown RBP16.63■□□□□ 0.25
SND1-201ENST00000354725 ZEB1P37275 1124 aaPredicted RBP16.62■□□□□ 0.25
SND1-201ENST00000354725 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.254e-7■■■■□ 21.1
SND1-201ENST00000354725 ERICH3Q5RHP9 1530 aa16.59■□□□□ 0.25
SND1-201ENST00000354725 GAPVD1Q14C86 1478 aa16.57■□□□□ 0.24
SND1-201ENST00000354725 CHD1O14646 1710 aa16.56■□□□□ 0.24
SND1-201ENST00000354725 ADAMTS12P58397 1594 aa16.56■□□□□ 0.24
SND1-201ENST00000354725 GRIN2BQ13224 1484 aa16.55■□□□□ 0.24
SND1-201ENST00000354725 TDRD9Q8NDG6 1382 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms