RNA–Protein interactions for RNA: ENST00000570756.5

SMG6-207, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 2,426 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-207ENST00000570756 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.4
SMG6-207ENST00000570756 CCDC180Q9P1Z9 1646 aa26.25■■□□□ 1.79
SMG6-207ENST00000570756 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
SMG6-207ENST00000570756 HRCP23327 699 aa25.89■■□□□ 1.73
SMG6-207ENST00000570756 SUPT5HO00267 1087 aaKnown RBP25.76■■□□□ 1.71
SMG6-207ENST00000570756 ABCC9O60706 1549 aa25.49■■□□□ 1.67
SMG6-207ENST00000570756 MYO15BQ96JP2 1530 aa25.45■■□□□ 1.66
SMG6-207ENST00000570756 CHIC1Q5VXU3 224 aa25.39■■□□□ 1.66
SMG6-207ENST00000570756 ZCCHC6Q5VYS8 1495 aaKnown RBP25.38■■□□□ 1.65
SMG6-207ENST00000570756 PCGF6Q9BYE7 350 aa25.35■■□□□ 1.65
SMG6-207ENST00000570756 DCAF8L2P0C7V8 631 aa25.21■■□□□ 1.63
SMG6-207ENST00000570756 DCAF1Q9Y4B6 1507 aa25.12■■□□□ 1.61
SMG6-207ENST00000570756 PPARGC1BQ86YN6 1023 aaKnown RBP25.12■■□□□ 1.61
SMG6-207ENST00000570756 PELP1Q8IZL8 1130 aaKnown RBP24.85■■□□□ 1.57
SMG6-207ENST00000570756 TRIM26Q12899 539 aaPredicted RBP24.76■■□□□ 1.55
SMG6-207ENST00000570756 LOC105371045A0A1W2PR82 267 aa24.63■■□□□ 1.53
SMG6-207ENST00000570756 ZEB1P37275 1124 aaPredicted RBP24.62■■□□□ 1.53
SMG6-207ENST00000570756 NACADO15069 1562 aa24.57■■□□□ 1.52
SMG6-207ENST00000570756 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
SMG6-207ENST00000570756 SCRIBQ14160 1630 aa24.32■■□□□ 1.48
SMG6-207ENST00000570756 SCAF1Q9H7N4 1312 aaKnown RBP24.26■■□□□ 1.47
SMG6-207ENST00000570756 UNC13AQ9UPW8 1703 aa24.12■■□□□ 1.45
SMG6-207ENST00000570756 PABPN1Q86U42 306 aaKnown RBP eCLIP24.03■■□□□ 1.44
SMG6-207ENST00000570756 TRIM41Q8WV44 630 aa23.99■■□□□ 1.43
SMG6-207ENST00000570756 MYT1Q01538 1121 aa23.91■■□□□ 1.42
SMG6-207ENST00000570756 RSF1Q96T23 1441 aaPredicted RBP23.87■■□□□ 1.41
SMG6-207ENST00000570756 BICRAQ9NZM4 1560 aa23.87■■□□□ 1.41
SMG6-207ENST00000570756 ACIN1Q9UKV3 1341 aaKnown RBP23.84■■□□□ 1.41
SMG6-207ENST00000570756 FAM9AQ8IZU1 332 aaPredicted RBP23.76■■□□□ 1.39
SMG6-207ENST00000570756 CENPBP07199 599 aaPredicted RBP23.68■■□□□ 1.38
SMG6-207ENST00000570756 NEUROD1Q13562 356 aa23.68■■□□□ 1.38
SMG6-207ENST00000570756 CCER1Q8TC90 406 aaPredicted RBP23.61■■□□□ 1.37
SMG6-207ENST00000570756 GTF3C3Q9Y5Q9 886 aa23.56■■□□□ 1.36
SMG6-207ENST00000570756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.55■■□□□ 1.36
SMG6-207ENST00000570756 DIEXFQ68CQ4 756 aaKnown RBP23.54■■□□□ 1.36
SMG6-207ENST00000570756 EHMT2Q96KQ7 1210 aa23.51■■□□□ 1.35
SMG6-207ENST00000570756 CECR2Q9BXF3 1484 aa23.5■■□□□ 1.35
SMG6-207ENST00000570756 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.321e-6■■■■■ 58.5
SMG6-207ENST00000570756 MROH2BQ7Z745 1585 aa23.26■■□□□ 1.31
SMG6-207ENST00000570756 ZNF316A6NFI3 1004 aaPredicted RBP23.19■■□□□ 1.3
SMG6-207ENST00000570756 SMARCA4P51532 1647 aa23.18■■□□□ 1.3
SMG6-207ENST00000570756 EIF4G1Q04637 1599 aaKnown RBP23.17■■□□□ 1.3
SMG6-207ENST00000570756 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
SMG6-207ENST00000570756 WIZO95785 1651 aa23.13■■□□□ 1.29
SMG6-207ENST00000570756 CEP162Q5TB80 1403 aa23.07■■□□□ 1.28
SMG6-207ENST00000570756 TNIKQ9UKE5 1360 aa22.99■■□□□ 1.27
SMG6-207ENST00000570756 YTHDC1Q96MU7 727 aaKnown RBP22.99■■□□□ 1.27
SMG6-207ENST00000570756 TTBK1Q5TCY1 1321 aaPredicted RBP22.97■■□□□ 1.27
SMG6-207ENST00000570756 CC2D2AQ9P2K1 1620 aa22.97■■□□□ 1.27
SMG6-207ENST00000570756 DNAJC5BQ9UF47 199 aa22.97■■□□□ 1.27
SMG6-207ENST00000570756 ATAD2BQ9ULI0 1458 aa22.91■■□□□ 1.26
SMG6-207ENST00000570756 EEA1Q15075 1411 aa22.9■■□□□ 1.26
SMG6-207ENST00000570756 CCDC88BA6NC98 1476 aa22.9■■□□□ 1.26
SMG6-207ENST00000570756 MIER1Q8N108 512 aa22.89■■□□□ 1.25
SMG6-207ENST00000570756 ABCC8Q09428 1581 aa22.86■■□□□ 1.25
SMG6-207ENST00000570756 TOP2AP11388 1531 aaKnown RBP22.81■■□□□ 1.24
SMG6-207ENST00000570756 PEG3Q9GZU2 1588 aa22.81■■□□□ 1.24
SMG6-207ENST00000570756 SMARCA2P51531 1590 aa22.8■■□□□ 1.24
SMG6-207ENST00000570756 CLSPNQ9HAW4 1339 aa22.8■■□□□ 1.24
SMG6-207ENST00000570756 SOGA1O94964 1423 aa22.78■■□□□ 1.24
SMG6-207ENST00000570756 CSRNP3Q8WYN3 585 aa22.76■■□□□ 1.23
SMG6-207ENST00000570756 BAZ1BQ9UIG0 1483 aaKnown RBP22.76■■□□□ 1.23
SMG6-207ENST00000570756 GOLGA3Q08378 1498 aa22.75■■□□□ 1.23
SMG6-207ENST00000570756 UBTFP17480 764 aaKnown RBP22.75■■□□□ 1.23
SMG6-207ENST00000570756 NCAPD3P42695 1498 aa22.72■■□□□ 1.23
SMG6-207ENST00000570756 HNRNPUL2Q1KMD3 747 aaKnown RBP22.64■■□□□ 1.21
SMG6-207ENST00000570756 HMGXB3Q12766 1538 aa22.62■■□□□ 1.21
SMG6-207ENST00000570756 RUSC2Q8N2Y8 1516 aa22.6■■□□□ 1.21
SMG6-207ENST00000570756 CEP164Q9UPV0 1460 aa22.55■■□□□ 1.2
SMG6-207ENST00000570756 KIF21BO75037 1637 aa22.52■■□□□ 1.2
SMG6-207ENST00000570756 SUPT16HQ9Y5B9 1047 aaKnown RBP22.52■■□□□ 1.2
SMG6-207ENST00000570756 VPS8Q8N3P4 1428 aa22.51■■□□□ 1.19
SMG6-207ENST00000570756 CLIP1P30622 1438 aa22.5■■□□□ 1.19
SMG6-207ENST00000570756 APLP2Q06481 763 aa22.48■■□□□ 1.19
SMG6-207ENST00000570756 ANP32EQ9BTT0 268 aa22.37■■□□□ 1.17
SMG6-207ENST00000570756 TSHZ2Q9NRE2 1034 aa22.35■■□□□ 1.17
SMG6-207ENST00000570756 DHX57Q6P158 1386 aaKnown RBP22.33■■□□□ 1.17
SMG6-207ENST00000570756 SYNJ1O43426 1573 aa22.27■■□□□ 1.16
SMG6-207ENST00000570756 NESP48681 1621 aa22.26■■□□□ 1.15
SMG6-207ENST00000570756 RAPGEF2Q9Y4G8 1499 aa22.22■■□□□ 1.15
SMG6-207ENST00000570756 CADPSQ9ULU8 1353 aa22.16■■□□□ 1.14
SMG6-207ENST00000570756 CFTRP13569 1480 aa22.13■■□□□ 1.13
SMG6-207ENST00000570756 CUX2O14529 1486 aa22.1■■□□□ 1.13
SMG6-207ENST00000570756 RRBP1Q9P2E9 1410 aaKnown RBP22.08■■□□□ 1.13
SMG6-207ENST00000570756 BCL11AQ9H165 835 aa22.08■■□□□ 1.12
SMG6-207ENST00000570756 RANGAP1P46060 587 aaPredicted RBP22.05■■□□□ 1.12
SMG6-207ENST00000570756 ERICH3Q5RHP9 1530 aa22.05■■□□□ 1.12
SMG6-207ENST00000570756 ARAP1Q96P48 1450 aa22.02■■□□□ 1.12
SMG6-207ENST00000570756 LAMC3Q9Y6N6 1575 aa22■■□□□ 1.11
SMG6-207ENST00000570756 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
SMG6-207ENST00000570756 KANK4Q5T7N3 995 aaPredicted RBP21.96■■□□□ 1.11
SMG6-207ENST00000570756 FKBP8Q14318 412 aa21.96■■□□□ 1.11
SMG6-207ENST00000570756 CCNB3Q8WWL7 1395 aa21.95■■□□□ 1.1
SMG6-207ENST00000570756 FANCD2Q9BXW9 1451 aa21.95■■□□□ 1.1
SMG6-207ENST00000570756 BCANQ96GW7 911 aa21.94■■□□□ 1.1
SMG6-207ENST00000570756 PRDM2Q13029 1718 aa21.94■■□□□ 1.1
SMG6-207ENST00000570756 PRXQ9BXM0 1461 aa21.93■■□□□ 1.1
SMG6-207ENST00000570756 NEFLP07196 543 aa21.93■■□□□ 1.1
SMG6-207ENST00000570756 KCNH8Q96L42 1107 aa21.92■■□□□ 1.1
SMG6-207ENST00000570756 KIF21AQ7Z4S6 1674 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms