Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 UBE2DNL-204ENST00000602536 740 ntBASIC22.1■■□□□ 1.13
FOXN3O00409 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.1■■□□□ 1.13
FOXN3O00409 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC22.1■■□□□ 1.13
FOXN3O00409 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
FOXN3O00409 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.1■■□□□ 1.13
FOXN3O00409 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
FOXN3O00409 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
FOXN3O00409 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.09■■□□□ 1.13
FOXN3O00409 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.09■■□□□ 1.13
FOXN3O00409 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
FOXN3O00409 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.09■■□□□ 1.13
FOXN3O00409 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.09■■□□□ 1.13
FOXN3O00409 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.09■■□□□ 1.13
FOXN3O00409 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.09■■□□□ 1.13
FOXN3O00409 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
FOXN3O00409 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 GABARAPL3-202ENST00000624044 1851 ntBASIC22.09■■□□□ 1.13
FOXN3O00409 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
FOXN3O00409 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.09■■□□□ 1.13
FOXN3O00409 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
FOXN3O00409 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
FOXN3O00409 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
FOXN3O00409 AC116050.2-201ENST00000612102 1779 ntBASIC22.08■■□□□ 1.13
FOXN3O00409 AC091799.1-201ENST00000422823 811 ntBASIC22.08■■□□□ 1.13
FOXN3O00409 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.08■■□□□ 1.13
FOXN3O00409 AC243732.1-201ENST00000612648 864 ntBASIC22.08■■□□□ 1.13
FOXN3O00409 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.08■■□□□ 1.13
FOXN3O00409 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
FOXN3O00409 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
FOXN3O00409 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
FOXN3O00409 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
FOXN3O00409 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
FOXN3O00409 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
FOXN3O00409 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.08■■□□□ 1.12
FOXN3O00409 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
FOXN3O00409 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
FOXN3O00409 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.07■■□□□ 1.12
FOXN3O00409 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.07■■□□□ 1.12
FOXN3O00409 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.07■■□□□ 1.12
FOXN3O00409 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.07■■□□□ 1.12
FOXN3O00409 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.07■■□□□ 1.12
FOXN3O00409 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
FOXN3O00409 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
FOXN3O00409 AL121603.2-201ENST00000557373 2117 ntBASIC22.07■■□□□ 1.12
FOXN3O00409 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
FOXN3O00409 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
FOXN3O00409 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.07■■□□□ 1.12
FOXN3O00409 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.06■■□□□ 1.12
FOXN3O00409 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.06■■□□□ 1.12
FOXN3O00409 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.06■■□□□ 1.12
FOXN3O00409 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.06■■□□□ 1.12
FOXN3O00409 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.06■■□□□ 1.12
FOXN3O00409 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.06■■□□□ 1.12
FOXN3O00409 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC22.06■■□□□ 1.12
FOXN3O00409 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.06■■□□□ 1.12
FOXN3O00409 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
FOXN3O00409 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
FOXN3O00409 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
FOXN3O00409 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.05■■□□□ 1.12
FOXN3O00409 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
FOXN3O00409 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.05■■□□□ 1.12
FOXN3O00409 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.05■■□□□ 1.12
FOXN3O00409 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
FOXN3O00409 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
FOXN3O00409 KRT18P5-201ENST00000436075 1291 ntBASIC22.05■■□□□ 1.12
FOXN3O00409 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC22.05■■□□□ 1.12
FOXN3O00409 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms