Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28BQ9BUN5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 BX005040.4-201ENST00000637145 1518 ntBASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 AC133561.4-201ENST00000566112 224 ntBASIC20.08■□□□□ 0.81
CCDC28BQ9BUN5 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 AC055733.4-201ENST00000638462 1354 ntBASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CCDC28BQ9BUN5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC28BQ9BUN5 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 PCDHAC2-203ENST00000615316 3011 ntBASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 AC099778.1-201ENST00000568593 1911 ntBASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC28BQ9BUN5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 SMG8-203ENST00000578922 2178 ntBASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28BQ9BUN5 AC011484.1-201ENST00000377652 1995 ntBASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 GUSBP5-201ENST00000418136 578 ntBASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28BQ9BUN5 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms