Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC15.33■□□□□ 0.04
PRKDCP78527 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.33■□□□□ 0.04
PRKDCP78527 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PRKDCP78527 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
PRKDCP78527 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.33■□□□□ 0.04
PRKDCP78527 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PRKDCP78527 MMP23A-201ENST00000234610 1017 ntBASIC15.32■□□□□ 0.04
PRKDCP78527 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PRKDCP78527 AC005363.2-201ENST00000618631 242 ntBASIC15.32■□□□□ 0.04
PRKDCP78527 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKDCP78527 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PRKDCP78527 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKDCP78527 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PRKDCP78527 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.32■□□□□ 0.04
PRKDCP78527 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
PRKDCP78527 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKDCP78527 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKDCP78527 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PRKDCP78527 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKDCP78527 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.32■□□□□ 0.04
PRKDCP78527 AL031963.3-201ENST00000606441 850 ntBASIC15.32■□□□□ 0.04
PRKDCP78527 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.31■□□□□ 0.04
PRKDCP78527 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
PRKDCP78527 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKDCP78527 AC087388.1-201ENST00000571370 1112 ntBASIC15.31■□□□□ 0.04
PRKDCP78527 AC010947.1-201ENST00000623454 693 ntBASIC15.31■□□□□ 0.04
PRKDCP78527 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PRKDCP78527 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKDCP78527 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PRKDCP78527 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKDCP78527 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
PRKDCP78527 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.3■□□□□ 0.04
PRKDCP78527 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKDCP78527 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKDCP78527 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PRKDCP78527 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PRKDCP78527 SLC25A3P1-201ENST00000443844 931 ntBASIC15.3■□□□□ 0.04
PRKDCP78527 PBX1-209ENST00000485769 834 ntTSL 2 BASIC15.3■□□□□ 0.04
PRKDCP78527 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.3■□□□□ 0.04
PRKDCP78527 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.3■□□□□ 0.04
PRKDCP78527 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
PRKDCP78527 AC243732.1-201ENST00000612648 864 ntBASIC15.3■□□□□ 0.04
PRKDCP78527 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 LINC01960-201ENST00000563759 1884 ntBASIC15.3■□□□□ 0.04
PRKDCP78527 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKDCP78527 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.3■□□□□ 0.04
PRKDCP78527 KRT18P48-201ENST00000434763 852 ntBASIC15.3■□□□□ 0.04
PRKDCP78527 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.3■□□□□ 0.04
PRKDCP78527 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKDCP78527 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKDCP78527 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
PRKDCP78527 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms