Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TRAV4A0A0B4J268 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV4A0A0B4J268 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV4A0A0B4J268 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV4A0A0B4J268 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV4A0A0B4J268 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV4A0A0B4J268 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV4A0A0B4J268 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV4A0A0B4J268 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV4A0A0B4J268 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV4A0A0B4J268 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV4A0A0B4J268 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV4A0A0B4J268 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAV4A0A0B4J268 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV4A0A0B4J268 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV4A0A0B4J268 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV4A0A0B4J268 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV4A0A0B4J268 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAV4A0A0B4J268 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV4A0A0B4J268 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV4A0A0B4J268 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV4A0A0B4J268 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV4A0A0B4J268 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAV4A0A0B4J268 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAV4A0A0B4J268 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAV4A0A0B4J268 ST7-AS1-201ENST00000456775 1889 ntBASIC18.96■□□□□ 0.63
TRAV4A0A0B4J268 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAV4A0A0B4J268 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC18.96■□□□□ 0.63
TRAV4A0A0B4J268 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
TRAV4A0A0B4J268 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAV4A0A0B4J268 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC18.95■□□□□ 0.62
TRAV4A0A0B4J268 AL135925.1-201ENST00000605920 1701 ntBASIC18.94■□□□□ 0.62
TRAV4A0A0B4J268 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC18.94■□□□□ 0.62
TRAV4A0A0B4J268 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC18.94■□□□□ 0.62
TRAV4A0A0B4J268 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV4A0A0B4J268 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV4A0A0B4J268 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAV4A0A0B4J268 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV4A0A0B4J268 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV4A0A0B4J268 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TRAV4A0A0B4J268 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV4A0A0B4J268 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAV4A0A0B4J268 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TRAV4A0A0B4J268 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV4A0A0B4J268 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV4A0A0B4J268 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAV4A0A0B4J268 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV4A0A0B4J268 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRAV4A0A0B4J268 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TRAV4A0A0B4J268 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TRAV4A0A0B4J268 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAV4A0A0B4J268 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC18.9■□□□□ 0.62
TRAV4A0A0B4J268 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.9■□□□□ 0.62
TRAV4A0A0B4J268 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRAV4A0A0B4J268 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAV4A0A0B4J268 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TRAV4A0A0B4J268 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAV4A0A0B4J268 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 ABCB10P3-201ENST00000561950 2166 ntBASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAV4A0A0B4J268 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV4A0A0B4J268 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV4A0A0B4J268 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC18.85■□□□□ 0.61
TRAV4A0A0B4J268 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV4A0A0B4J268 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV4A0A0B4J268 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV4A0A0B4J268 AL391121.1-201ENST00000607967 1349 ntBASIC18.84■□□□□ 0.61
TRAV4A0A0B4J268 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV4A0A0B4J268 EBPL-202ENST00000378268 680 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAV4A0A0B4J268 AC097358.2-201ENST00000607541 1159 ntBASIC18.84■□□□□ 0.61
TRAV4A0A0B4J268 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
TRAV4A0A0B4J268 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV4A0A0B4J268 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV4A0A0B4J268 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 AC136428.2-201ENST00000563187 214 ntBASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV4A0A0B4J268 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV4A0A0B4J268 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV4A0A0B4J268 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV4A0A0B4J268 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV4A0A0B4J268 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV4A0A0B4J268 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV4A0A0B4J268 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TRAV4A0A0B4J268 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV4A0A0B4J268 DENR-202ENST00000455982 1052 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAV4A0A0B4J268 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAV4A0A0B4J268 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAV4A0A0B4J268 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRAV4A0A0B4J268 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV4A0A0B4J268 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV4A0A0B4J268 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
TRAV4A0A0B4J268 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms