Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC14.37□□□□□ -0.113e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.16□□□□□ -0.143e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-212ENST00000569281 661 ntAPPRIS P1 TSL 4 BASIC10.66□□□□□ -0.73e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-209ENST00000567669 745 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.793e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-213ENST00000569723 550 ntTSL 4 BASIC9.83□□□□□ -0.843e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.533e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.28□□□□□ -1.563e-13■■■■■ 30.3
LIN28BQ6ZN17 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.21□□□□□ -1.743e-13■■■■■ 30.3
LIN28BQ6ZN17 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.27■□□□□ 0.194e-7■■■■■ 30.3
LIN28BQ6ZN17 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.31□□□□□ -0.284e-7■■■■■ 30.3
LIN28BQ6ZN17 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC12.74□□□□□ -0.374e-7■■■■■ 30.3
LIN28BQ6ZN17 PSME3-205ENST00000545225 3082 ntTSL 2 BASIC11.12□□□□□ -0.634e-7■■■■■ 30.3
LIN28BQ6ZN17 PSME3-201ENST00000293362 3144 ntTSL 1 (best) BASIC10.45□□□□□ -0.744e-7■■■■■ 30.3
LIN28BQ6ZN17 TBC1D1-209ENST00000446803 1987 ntTSL 224.71■■□□□ 1.553e-12■■■■■ 30.3
LIN28BQ6ZN17 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.545e-12■■■■■ 30.3
LIN28BQ6ZN17 SUPT5H-216ENST00000599335 3796 ntTSL 211.58□□□□□ -0.556e-16■■■■■ 30.3
LIN28BQ6ZN17 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.625e-12■■■■■ 30.3
LIN28BQ6ZN17 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC11.17□□□□□ -0.625e-12■■■■■ 30.3
LIN28BQ6ZN17 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.675e-12■■■■■ 30.3
LIN28BQ6ZN17 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.775e-12■■■■■ 30.3
LIN28BQ6ZN17 TBC1D1-212ENST00000491553 455 ntTSL 27.96□□□□□ -1.143e-12■■■■■ 30.3
LIN28BQ6ZN17 ILF3-215ENST00000589485 620 ntTSL 223.29■■□□□ 1.324e-8■■■■■ 30.3
LIN28BQ6ZN17 ILF3-207ENST00000587840 655 ntTSL 518■□□□□ 0.474e-8■■■■■ 30.3
LIN28BQ6ZN17 ILF3-206ENST00000587505 791 ntTSL 517.76■□□□□ 0.434e-8■■■■■ 30.3
LIN28BQ6ZN17 ILF3-214ENST00000589416 773 ntTSL 416.68■□□□□ 0.264e-8■■■■■ 30.3
LIN28BQ6ZN17 ILF3-212ENST00000589173 570 ntTSL 516.08■□□□□ 0.164e-8■■■■■ 30.3
LIN28BQ6ZN17 ALDH1A1-204ENST00000446946 805 ntTSL 59.16□□□□□ -0.947e-9■■■■■ 30.2
LIN28BQ6ZN17 ALDH1A1-203ENST00000419959 806 ntTSL 57.96□□□□□ -1.147e-9■■■■■ 30.2
LIN28BQ6ZN17 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC7.96□□□□□ -1.147e-9■■■■■ 30.2
LIN28BQ6ZN17 ALDH1A1-201ENST00000297785 2107 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.247e-9■■■■■ 30.2
LIN28BQ6ZN17 ALDH1A1-206ENST00000493113 604 ntTSL 25.98□□□□□ -1.457e-9■■■■■ 30.2
LIN28BQ6ZN17 ALDH1A1-205ENST00000482210 879 ntTSL 25.5□□□□□ -1.537e-9■■■■■ 30.2
LIN28BQ6ZN17 SLC6A8-202ENST00000413787 468 ntTSL 520.32■□□□□ 0.846e-14■■■■■ 30.2
LIN28BQ6ZN17 SLC6A8-210ENST00000485324 2401 ntTSL 220.01■□□□□ 0.796e-14■■■■■ 30.2
LIN28BQ6ZN17 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.52■□□□□ 0.46e-14■■■■■ 30.2
LIN28BQ6ZN17 SLC6A8-205ENST00000442457 523 ntTSL 313.81□□□□□ -0.26e-14■■■■■ 30.2
LIN28BQ6ZN17 SLC6A8-208ENST00000467402 308 ntTSL 513.71□□□□□ -0.216e-14■■■■■ 30.2
LIN28BQ6ZN17 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.173e-8■■■■■ 30.2
LIN28BQ6ZN17 PPP2CB-207ENST00000520500 603 ntTSL 47.1□□□□□ -1.278e-12■■■■■ 30.2
LIN28BQ6ZN17 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.2■□□□□ 0.342e-9■■■■■ 30.2
LIN28BQ6ZN17 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.262e-9■■■■■ 30.2
LIN28BQ6ZN17 PDHA1-207ENST00000423505 731 ntTSL 220.53■□□□□ 0.881e-9■■■■■ 30.2
LIN28BQ6ZN17 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.4■□□□□ 0.71e-9■■■■■ 30.2
LIN28BQ6ZN17 PDHA1-205ENST00000417819 471 ntTSL 317.69■□□□□ 0.421e-9■■■■■ 30.2
LIN28BQ6ZN17 PDHA1-201ENST00000355808 699 ntTSL 317.69■□□□□ 0.421e-9■■■■■ 30.2
LIN28BQ6ZN17 PDHA1-211ENST00000492364 611 ntTSL 215.04■□□□□ -01e-9■■■■■ 30.2
LIN28BQ6ZN17 VCL-205ENST00000478896 727 ntTSL 515.29■□□□□ 0.043e-7■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22■■□□□ 1.115e-8■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.68■■□□□ 1.065e-8■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.92■□□□□ 0.945e-8■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.545e-8■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.255e-8■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-205ENST00000469566 831 ntTSL 210.93□□□□□ -0.665e-8■■■■■ 30.2
LIN28BQ6ZN17 SELENOF-204ENST00000467557 499 ntTSL 58.53□□□□□ -1.045e-8■■■■■ 30.2
LIN28BQ6ZN17 TMEM87A-203ENST00000448392 3049 ntTSL 1 (best) BASIC8.59□□□□□ -1.032e-8■■■■■ 30.1
LIN28BQ6ZN17 TMEM87A-202ENST00000389834 3109 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.12e-8■■■■■ 30.1
LIN28BQ6ZN17 ARVCF-211ENST00000495096 2549 ntTSL 219.23■□□□□ 0.672e-8■■■■■ 30.1
LIN28BQ6ZN17 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.132e-8■■■■■ 30.1
LIN28BQ6ZN17 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.46■□□□□ 0.072e-8■■■■■ 30.1
LIN28BQ6ZN17 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.02□□□□□ -0.012e-8■■■■■ 30.1
LIN28BQ6ZN17 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.132e-8■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-204ENST00000474586 868 ntTSL 324.28■■□□□ 1.482e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-203ENST00000448549 582 ntTSL 417.96■□□□□ 0.472e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.462e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-208ENST00000490942 862 ntTSL 1 (best)17.38■□□□□ 0.372e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.372e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.192e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.042e-7■■■■■ 30.1
LIN28BQ6ZN17 TRA2A-209ENST00000494255 1653 ntTSL 1 (best)13.79□□□□□ -0.22e-7■■■■■ 30.1
LIN28BQ6ZN17 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.143e-7■■■■■ 30.1
LIN28BQ6ZN17 HNRNPM-214ENST00000600806 2373 ntTSL 519.05■□□□□ 0.643e-7■■■■■ 30.1
LIN28BQ6ZN17 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.633e-7■■■■■ 30.1
LIN28BQ6ZN17 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.453e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-219ENST00000636033 1940 ntTSL 522.19■■□□□ 1.143e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-239ENST00000636920 1989 ntTSL 518.63■□□□□ 0.573e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-216ENST00000635944 1960 ntTSL 518.41■□□□□ 0.543e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.84■□□□□ 0.453e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-236ENST00000636815 1724 ntTSL 517.63■□□□□ 0.413e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.37■□□□□ 0.373e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-233ENST00000636701 2158 ntTSL 517.3■□□□□ 0.363e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-217ENST00000635998 1845 ntTSL 517.13■□□□□ 0.333e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.283e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.7■□□□□ 0.263e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-243ENST00000637095 2048 ntTSL 516.52■□□□□ 0.233e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.16■□□□□ 0.183e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-222ENST00000636160 2328 ntTSL 515.58■□□□□ 0.083e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-228ENST00000636494 1975 ntTSL 515.57■□□□□ 0.083e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.55■□□□□ 0.083e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.073e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.31■□□□□ 0.043e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-241ENST00000637013 2649 ntTSL 515.03■□□□□ -03e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-247ENST00000637429 2558 ntTSL 514.01□□□□□ -0.173e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-245ENST00000637244 3151 ntTSL 1 (best)13.9□□□□□ -0.183e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.223e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-269ENST00000638069 3068 ntTSL 511.34□□□□□ -0.593e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-202ENST00000314146 1690 ntTSL 1 (best) BASIC11.24□□□□□ -0.613e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-248ENST00000637484 2304 ntTSL 58.49□□□□□ -1.053e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-220ENST00000636050 2546 ntTSL 57.64□□□□□ -1.193e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC7.57□□□□□ -1.23e-7■■■■■ 30.1
LIN28BQ6ZN17 ASAH1-253ENST00000637609 4981 ntTSL 57.31□□□□□ -1.243e-7■■■■■ 30.1
Retrieved 100 of 21,972 protein–RNA pairs in 216.3 ms