Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 FADS1-202ENST00000421879 583 ntTSL 314.77□□□□□ -0.058e-9■■■□□ 17.9
SMNDC1O75940 FADS1-207ENST00000466716 640 ntTSL 513.57□□□□□ -0.248e-9■■■□□ 17.9
SMNDC1O75940 FADS1-209ENST00000491310 525 ntTSL 512.37□□□□□ -0.438e-9■■■□□ 17.9
SMNDC1O75940 FADS1-203ENST00000424501 926 ntTSL 311.93□□□□□ -0.58e-9■■■□□ 17.9
SMNDC1O75940 FADS1-214ENST00000540767 742 ntTSL 311.36□□□□□ -0.598e-9■■■□□ 17.9
SMNDC1O75940 FADS1-205ENST00000448607 559 ntTSL 410.99□□□□□ -0.658e-9■■■□□ 17.9
SMNDC1O75940 OAZ1-204ENST00000588673 780 ntTSL 318.24■□□□□ 0.514e-9■■■□□ 17.9
SMNDC1O75940 MICALL2-206ENST00000470807 668 ntTSL 315.26■□□□□ 0.032e-6■■■□□ 17.9
SMNDC1O75940 MICALL2-214ENST00000493998 404 ntTSL 211.56□□□□□ -0.562e-6■■■□□ 17.9
SMNDC1O75940 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.957e-7■■■□□ 17.9
SMNDC1O75940 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.52■□□□□ 0.877e-7■■■□□ 17.9
SMNDC1O75940 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.44■□□□□ 0.867e-7■■■□□ 17.9
SMNDC1O75940 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.637e-7■■■□□ 17.9
SMNDC1O75940 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.12e-6■■■□□ 17.9
SMNDC1O75940 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.79■■□□□ 1.082e-6■■■□□ 17.9
SMNDC1O75940 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.37■□□□□ 0.851e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-206ENST00000474814 1903 ntTSL 218■□□□□ 0.471e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-201ENST00000461448 1629 ntTSL 1 (best)17.33■□□□□ 0.371e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-208ENST00000481220 751 ntTSL 316.3■□□□□ 0.21e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.35□□□□□ -0.271e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-209ENST00000481368 1588 ntTSL 1 (best)12.92□□□□□ -0.341e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-205ENST00000470977 1098 ntTSL 1 (best)11.76□□□□□ -0.531e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-211ENST00000488745 1365 ntTSL 1 (best) BASIC10.87□□□□□ -0.671e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-204ENST00000464612 719 ntTSL 1 (best)7.99□□□□□ -1.131e-79■■■□□ 17.8
SMNDC1O75940 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.99□□□□□ -1.291e-79■■■□□ 17.8
SMNDC1O75940 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.275e-7■■■□□ 17.8
SMNDC1O75940 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.78■□□□□ 0.67e-7■■■□□ 17.8
SMNDC1O75940 ARFRP1-211ENST00000618568 1612 ntTSL 318.22■□□□□ 0.517e-7■■■□□ 17.8
SMNDC1O75940 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.03■□□□□ 0.327e-7■■■□□ 17.8
SMNDC1O75940 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.117e-7■■■□□ 17.8
SMNDC1O75940 SHC1-201ENST00000366442 780 ntTSL 321.21■□□□□ 0.991e-10■■■□□ 17.8
SMNDC1O75940 SHC1-206ENST00000412170 692 ntTSL 521.21■□□□□ 0.991e-10■■■□□ 17.8
SMNDC1O75940 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.211e-10■■■□□ 17.8
SMNDC1O75940 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.211e-10■■■□□ 17.8
SMNDC1O75940 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.71□□□□□ -0.051e-10■■■□□ 17.8
SMNDC1O75940 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.241e-10■■■□□ 17.8
SMNDC1O75940 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.251e-10■■■□□ 17.8
SMNDC1O75940 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.261e-10■■■□□ 17.8
SMNDC1O75940 SHC1-203ENST00000368449 2879 ntTSL 5 BASIC13.39□□□□□ -0.271e-10■■■□□ 17.8
SMNDC1O75940 GTF3C2-201ENST00000264720 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.577e-6■■■□□ 17.8
SMNDC1O75940 GTF3C2-202ENST00000359541 3992 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.917e-6■■■□□ 17.8
SMNDC1O75940 MTRNR2L1-201ENST00000540040 1553 ntAPPRIS P1 BASIC8.55□□□□□ -1.041e-10■■■□□ 17.8
SMNDC1O75940 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC8.24□□□□□ -1.091e-10■■■□□ 17.8
SMNDC1O75940 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.713e-6■■■□□ 17.8
SMNDC1O75940 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.79■■□□□ 1.43e-6■■■□□ 17.8
SMNDC1O75940 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC11.45□□□□□ -0.583e-6■■■□□ 17.8
SMNDC1O75940 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.171e-6■■■□□ 17.8
SMNDC1O75940 DGCR8-202ENST00000383024 4419 ntTSL 5 BASIC11.67□□□□□ -0.541e-6■■■□□ 17.8
SMNDC1O75940 CHD8-206ENST00000553870 679 ntTSL 58.32□□□□□ -1.082e-27■■■□□ 17.8
SMNDC1O75940 SNORD9-201ENST00000362566 104 ntBASIC3.22□□□□□ -1.892e-27■■■□□ 17.8
SMNDC1O75940 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.53e-9■■■□□ 17.8
SMNDC1O75940 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.023e-9■■■□□ 17.8
SMNDC1O75940 EEF1A1-201ENST00000309268 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.683e-9■■■□□ 17.8
SMNDC1O75940 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.26□□□□□ -1.573e-9■■■□□ 17.8
SMNDC1O75940 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.08□□□□□ -1.63e-9■■■□□ 17.8
SMNDC1O75940 DNAJB1-208ENST00000598235 882 ntTSL 516.77■□□□□ 0.282e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-211ENST00000601533 573 ntTSL 216.15■□□□□ 0.182e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.142e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-207ENST00000596853 593 ntTSL 415.53■□□□□ 0.082e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-203ENST00000594099 995 ntTSL 414.98□□□□□ -0.012e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-206ENST00000596075 573 ntTSL 413.45□□□□□ -0.262e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-209ENST00000598692 567 ntTSL 211.4□□□□□ -0.582e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-202ENST00000396969 1287 ntTSL 2 BASIC8.53□□□□□ -1.042e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-204ENST00000595139 569 ntTSL 48.06□□□□□ -1.122e-12■■■□□ 17.8
SMNDC1O75940 DNAJB1-205ENST00000595992 601 ntTSL 26.15□□□□□ -1.422e-12■■■□□ 17.8
SMNDC1O75940 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.317e-12■■■□□ 17.8
SMNDC1O75940 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.182e-6■■■□□ 17.8
SMNDC1O75940 SEPT5-212ENST00000470814 2353 ntTSL 520.51■□□□□ 0.872e-6■■■□□ 17.8
SMNDC1O75940 SEPT5-207ENST00000431044 3173 ntTSL 1 (best)17.1■□□□□ 0.332e-6■■■□□ 17.8
SMNDC1O75940 SEPT5-211ENST00000455843 4113 ntTSL 1 (best)15.05■□□□□ -02e-6■■■□□ 17.8
SMNDC1O75940 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.91■□□□□ 0.462e-6■■■□□ 17.8
SMNDC1O75940 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.352e-6■■■□□ 17.8
SMNDC1O75940 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.97■□□□□ 0.312e-6■■■□□ 17.8
SMNDC1O75940 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.42■□□□□ 0.222e-6■■■□□ 17.8
SMNDC1O75940 EIF4A2-216ENST00000468362 1356 ntTSL 29.35□□□□□ -0.912e-21■■■□□ 17.7
SMNDC1O75940 EIF4A2-223ENST00000494445 629 ntTSL 28.11□□□□□ -1.112e-21■■■□□ 17.7
SMNDC1O75940 EIF4A2-222ENST00000492144 993 ntTSL 27.57□□□□□ -1.22e-21■■■□□ 17.7
SMNDC1O75940 EIF4A2-226ENST00000497177 849 ntTSL 57.36□□□□□ -1.232e-21■■■□□ 17.7
SMNDC1O75940 SEPT9-235ENST00000591020 582 ntTSL 49.91□□□□□ -0.822e-6■■■□□ 17.7
SMNDC1O75940 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.087e-6■■■□□ 17.7
SMNDC1O75940 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.137e-6■■■□□ 17.7
SMNDC1O75940 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.631e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-216ENST00000641834 1718 nt18.08■□□□□ 0.481e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.181e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-210ENST00000598463 1844 ntTSL 1 (best)13.94□□□□□ -0.181e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-203ENST00000593287 578 ntTSL 512.24□□□□□ -0.451e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-206ENST00000596554 727 ntTSL 311.73□□□□□ -0.531e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-209ENST00000597705 892 ntTSL 311.35□□□□□ -0.591e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-213ENST00000601267 782 ntTSL 211.13□□□□□ -0.631e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-208ENST00000597493 971 ntTSL 211.04□□□□□ -0.641e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-211ENST00000599004 866 ntTSL 510.8□□□□□ -0.681e-9■■■□□ 17.7
SMNDC1O75940 C19orf48-204ENST00000595794 941 ntTSL 1 (best)10.21□□□□□ -0.771e-9■■■□□ 17.7
SMNDC1O75940 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.731e-51■■■□□ 17.7
SMNDC1O75940 PGK1-202ENST00000474281 307 ntTSL 1 (best)5.84□□□□□ -1.471e-51■■■□□ 17.7
SMNDC1O75940 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.061e-6■■■□□ 17.7
SMNDC1O75940 LINC01089-203ENST00000535614 480 ntTSL 414.76□□□□□ -0.052e-6■■■□□ 17.7
SMNDC1O75940 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.57□□□□□ -0.082e-6■■■□□ 17.7
SMNDC1O75940 LINC01089-204ENST00000535643 1014 ntTSL 1 (best)12.38□□□□□ -0.432e-6■■■□□ 17.7
SMNDC1O75940 LINC01089-205ENST00000536662 560 ntTSL 4 BASIC11.87□□□□□ -0.512e-6■■■□□ 17.7
SMNDC1O75940 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.559e-13■■■□□ 17.7
Retrieved 100 of 11,362 protein–RNA pairs in 151.7 ms