RNA–Protein interactions for RNA: ENST00000359541.6

GTF3C2-202, Transcript of general transcription factor IIIC subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C2, Length 3,992 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C2-202ENST00000359541 NISCHQ9Y2I1 1504 aa19.41■□□□□ 0.7
GTF3C2-202ENST00000359541 CCDC180Q9P1Z9 1646 aa16.64■□□□□ 0.25
GTF3C2-202ENST00000359541 ZCCHC6Q5VYS8 1495 aaKnown RBP16.39■□□□□ 0.21
GTF3C2-202ENST00000359541 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
GTF3C2-202ENST00000359541 DCAF8L2P0C7V8 631 aa16.19■□□□□ 0.18
GTF3C2-202ENST00000359541 SUPT5HO00267 1087 aaKnown RBP16.07■□□□□ 0.16
GTF3C2-202ENST00000359541 DCAF1Q9Y4B6 1507 aa16.01■□□□□ 0.15
GTF3C2-202ENST00000359541 MYO15BQ96JP2 1530 aa15.63■□□□□ 0.09
GTF3C2-202ENST00000359541 CHIC1Q5VXU3 224 aa15.52■□□□□ 0.08
GTF3C2-202ENST00000359541 SCRIBQ14160 1630 aa15.47■□□□□ 0.07
GTF3C2-202ENST00000359541 NACADO15069 1562 aa15.45■□□□□ 0.06
GTF3C2-202ENST00000359541 ABCC9O60706 1549 aa15.44■□□□□ 0.06
GTF3C2-202ENST00000359541 RSF1Q96T23 1441 aaPredicted RBP15.27■□□□□ 0.04
GTF3C2-202ENST00000359541 RB1CC1Q8TDY2 1594 aa15.23■□□□□ 0.03
GTF3C2-202ENST00000359541 TRIM41Q8WV44 630 aa15.08■□□□□ 0
GTF3C2-202ENST00000359541 CECR2Q9BXF3 1484 aa15.04■□□□□ -0
GTF3C2-202ENST00000359541 MROH2BQ7Z745 1585 aa15□□□□□ -0.01
GTF3C2-202ENST00000359541 BAZ1AQ9NRL2 1556 aaPredicted RBP15□□□□□ -0.01
GTF3C2-202ENST00000359541 LOC105371045A0A1W2PR82 267 aa14.97□□□□□ -0.01
GTF3C2-202ENST00000359541 PCGF6Q9BYE7 350 aa14.92□□□□□ -0.02
GTF3C2-202ENST00000359541 WIZO95785 1651 aa14.89□□□□□ -0.03
GTF3C2-202ENST00000359541 HRCP23327 699 aa14.85□□□□□ -0.03
GTF3C2-202ENST00000359541 FAM9AQ8IZU1 332 aaPredicted RBP14.83□□□□□ -0.03
GTF3C2-202ENST00000359541 SMARCA4P51532 1647 aa14.8□□□□□ -0.04
GTF3C2-202ENST00000359541 TOP2AP11388 1531 aaKnown RBP14.79□□□□□ -0.04
GTF3C2-202ENST00000359541 TRIM26Q12899 539 aaPredicted RBP14.78□□□□□ -0.04
GTF3C2-202ENST00000359541 UNC13AQ9UPW8 1703 aa14.73□□□□□ -0.05
GTF3C2-202ENST00000359541 PABPN1Q86U42 306 aaKnown RBP eCLIP14.71□□□□□ -0.05
GTF3C2-202ENST00000359541 CCDC88BA6NC98 1476 aa14.66□□□□□ -0.06
GTF3C2-202ENST00000359541 EHMT2Q96KQ7 1210 aa14.64□□□□□ -0.07
GTF3C2-202ENST00000359541 SMARCA2P51531 1590 aa14.63□□□□□ -0.07
GTF3C2-202ENST00000359541 BICRAQ9NZM4 1560 aa14.61□□□□□ -0.07
GTF3C2-202ENST00000359541 EIF4G1Q04637 1599 aaKnown RBP14.6□□□□□ -0.07
GTF3C2-202ENST00000359541 ZEB1P37275 1124 aaPredicted RBP14.56□□□□□ -0.08
GTF3C2-202ENST00000359541 EEA1Q15075 1411 aa14.54□□□□□ -0.08
GTF3C2-202ENST00000359541 PEG3Q9GZU2 1588 aa14.54□□□□□ -0.08
GTF3C2-202ENST00000359541 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
GTF3C2-202ENST00000359541 BAZ1BQ9UIG0 1483 aaKnown RBP14.5□□□□□ -0.09
GTF3C2-202ENST00000359541 ATAD2BQ9ULI0 1458 aa14.47□□□□□ -0.09
GTF3C2-202ENST00000359541 WRNQ14191 1432 aaPredicted RBP eCLIP14.45□□□□□ -0.1
GTF3C2-202ENST00000359541 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
GTF3C2-202ENST00000359541 UBTFP17480 764 aaKnown RBP14.41□□□□□ -0.1
GTF3C2-202ENST00000359541 TNIKQ9UKE5 1360 aa14.38□□□□□ -0.11
GTF3C2-202ENST00000359541 PPARGC1BQ86YN6 1023 aaKnown RBP14.38□□□□□ -0.11
GTF3C2-202ENST00000359541 SOGA1O94964 1423 aa14.37□□□□□ -0.11
GTF3C2-202ENST00000359541 GOLGA3Q08378 1498 aa14.35□□□□□ -0.11
GTF3C2-202ENST00000359541 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
GTF3C2-202ENST00000359541 SLC24A1O60721 1099 aa14.33□□□□□ -0.12
GTF3C2-202ENST00000359541 CEP164Q9UPV0 1460 aa14.29□□□□□ -0.12
GTF3C2-202ENST00000359541 HMGXB3Q12766 1538 aa14.26□□□□□ -0.13
GTF3C2-202ENST00000359541 NCAPD3P42695 1498 aa14.25□□□□□ -0.13
GTF3C2-202ENST00000359541 SYNJ1O43426 1573 aa14.24□□□□□ -0.13
GTF3C2-202ENST00000359541 RUSC2Q8N2Y8 1516 aa14.23□□□□□ -0.13
GTF3C2-202ENST00000359541 APLP2Q06481 763 aa14.22□□□□□ -0.13
GTF3C2-202ENST00000359541 CCER1Q8TC90 406 aaPredicted RBP14.2□□□□□ -0.14
GTF3C2-202ENST00000359541 KIF21BO75037 1637 aa14.2□□□□□ -0.14
GTF3C2-202ENST00000359541 TTBK1Q5TCY1 1321 aaPredicted RBP14.17□□□□□ -0.14
GTF3C2-202ENST00000359541 TOP2BQ02880 1626 aa14.16□□□□□ -0.14
GTF3C2-202ENST00000359541 CLIP1P30622 1438 aa14.16□□□□□ -0.14
GTF3C2-202ENST00000359541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.09□□□□□ -0.15
GTF3C2-202ENST00000359541 BIVM-ERCC5R4GMW8 1640 aa14.09□□□□□ -0.15
GTF3C2-202ENST00000359541 CFTRP13569 1480 aa14.08□□□□□ -0.16
GTF3C2-202ENST00000359541 KIF27Q86VH2 1401 aa14.08□□□□□ -0.16
GTF3C2-202ENST00000359541 VPS8Q8N3P4 1428 aa14.07□□□□□ -0.16
GTF3C2-202ENST00000359541 RAPGEF2Q9Y4G8 1499 aa14.06□□□□□ -0.16
GTF3C2-202ENST00000359541 RANGAP1P46060 587 aaPredicted RBP14.04□□□□□ -0.16
GTF3C2-202ENST00000359541 ERICH3Q5RHP9 1530 aa14.04□□□□□ -0.16
GTF3C2-202ENST00000359541 CUX1P39880 1505 aa14□□□□□ -0.17
GTF3C2-202ENST00000359541 CADPSQ9ULU8 1353 aa13.99□□□□□ -0.17
GTF3C2-202ENST00000359541 PRXQ9BXM0 1461 aa13.98□□□□□ -0.17
GTF3C2-202ENST00000359541 PRDM2Q13029 1718 aa13.92□□□□□ -0.18
GTF3C2-202ENST00000359541 HNRNPUL2Q1KMD3 747 aaKnown RBP13.92□□□□□ -0.18
GTF3C2-202ENST00000359541 CUX2O14529 1486 aa13.9□□□□□ -0.18
GTF3C2-202ENST00000359541 PELP1Q8IZL8 1130 aaKnown RBP13.9□□□□□ -0.19
GTF3C2-202ENST00000359541 CC2D2AQ9P2K1 1620 aa13.89□□□□□ -0.19
GTF3C2-202ENST00000359541 FANCD2Q9BXW9 1451 aa13.84□□□□□ -0.19
GTF3C2-202ENST00000359541 FGD5Q6ZNL6 1462 aa13.83□□□□□ -0.2
GTF3C2-202ENST00000359541 ARAP1Q96P48 1450 aa13.82□□□□□ -0.2
GTF3C2-202ENST00000359541 CARMIL1Q5VZK9 1371 aa13.82□□□□□ -0.2
GTF3C2-202ENST00000359541 SCAF1Q9H7N4 1312 aaKnown RBP13.82□□□□□ -0.2
GTF3C2-202ENST00000359541 IGF1RP08069 1367 aa13.81□□□□□ -0.2
GTF3C2-202ENST00000359541 DIEXFQ68CQ4 756 aaKnown RBP13.79□□□□□ -0.2
GTF3C2-202ENST00000359541 DNMBPQ6XZF7 1577 aa13.76□□□□□ -0.21
GTF3C2-202ENST00000359541 ZNF316A6NFI3 1004 aaPredicted RBP13.75□□□□□ -0.21
GTF3C2-202ENST00000359541 ARHGAP35Q9NRY4 1499 aa13.75□□□□□ -0.21
GTF3C2-202ENST00000359541 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
GTF3C2-202ENST00000359541 FHAD1B1AJZ9 1412 aa13.74□□□□□ -0.21
GTF3C2-202ENST00000359541 CENPBP07199 599 aaPredicted RBP13.72□□□□□ -0.21
GTF3C2-202ENST00000359541 KANK4Q5T7N3 995 aaPredicted RBP13.71□□□□□ -0.22
GTF3C2-202ENST00000359541 TOPBP1Q92547 1522 aa13.7□□□□□ -0.22
GTF3C2-202ENST00000359541 LAMC3Q9Y6N6 1575 aa13.7□□□□□ -0.22
GTF3C2-202ENST00000359541 ABCA10Q8WWZ4 1543 aa13.7□□□□□ -0.22
GTF3C2-202ENST00000359541 PDS5BQ9NTI5 1447 aa13.69□□□□□ -0.22
GTF3C2-202ENST00000359541 CCNB3Q8WWL7 1395 aa13.69□□□□□ -0.22
GTF3C2-202ENST00000359541 DNAJC5BQ9UF47 199 aa13.69□□□□□ -0.22
GTF3C2-202ENST00000359541 RRBP1Q9P2E9 1410 aaKnown RBP13.68□□□□□ -0.22
GTF3C2-202ENST00000359541 POLA1P09884 1462 aaPredicted RBP13.67□□□□□ -0.22
GTF3C2-202ENST00000359541 MAP3K1Q13233 1512 aa13.67□□□□□ -0.22
GTF3C2-202ENST00000359541 ATP1B4Q9UN42 357 aaPredicted RBP13.67□□□□□ -0.22
GTF3C2-202ENST00000359541 RAD54L2Q9Y4B4 1467 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms