Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC14.62□□□□□ -0.071e-6■□□□□ 10
SFPQP23246 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC14.54□□□□□ -0.081e-6■□□□□ 10
SFPQP23246 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.131e-6■□□□□ 10
SFPQP23246 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.691e-6■□□□□ 10
SFPQP23246 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.971e-6■□□□□ 10
SFPQP23246 PPP4R2-203ENST00000470976 1033 ntTSL 230.01■■■□□ 2.391e-6■□□□□ 10
SFPQP23246 PPP4R2-205ENST00000482242 771 ntTSL 329.6■■■□□ 2.331e-6■□□□□ 10
SFPQP23246 PPP4R2-206ENST00000488810 877 ntTSL 529.22■■■□□ 2.271e-6■□□□□ 10
SFPQP23246 LRRC8D-205ENST00000525774 588 ntTSL 426.88■■□□□ 1.892e-8■□□□□ 10
SFPQP23246 ZNF580-206ENST00000592881 1019 ntTSL 323.78■■□□□ 1.41e-6■□□□□ 10
SFPQP23246 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.351e-6■□□□□ 10
SFPQP23246 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.841e-6■□□□□ 10
SFPQP23246 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.6■□□□□ 0.731e-6■□□□□ 10
SFPQP23246 ST3GAL2-203ENST00000561708 581 ntTSL 419.14■□□□□ 0.651e-6■□□□□ 10
SFPQP23246 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.571e-6■□□□□ 10
SFPQP23246 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.561e-6■□□□□ 10
SFPQP23246 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.99■□□□□ 0.471e-6■□□□□ 10
SFPQP23246 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.352e-8■□□□□ 10
SFPQP23246 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.252e-8■□□□□ 10
SFPQP23246 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.021e-6■□□□□ 10
SFPQP23246 AC005072.1-201ENST00000606640 1779 ntBASIC13.96□□□□□ -0.171e-6■□□□□ 10
SFPQP23246 SLC39A14-211ENST00000522881 560 ntTSL 513.65□□□□□ -0.222e-8■□□□□ 10
SFPQP23246 LRRC8D-206ENST00000527156 922 ntTSL 212.82□□□□□ -0.362e-8■□□□□ 10
SFPQP23246 LRRC8D-207ENST00000532201 597 ntTSL 412.22□□□□□ -0.452e-8■□□□□ 10
SFPQP23246 CUX1-217ENST00000558836 2965 ntTSL 512.08□□□□□ -0.481e-6■□□□□ 10
SFPQP23246 CBFA2T2-202ENST00000344201 1181 ntTSL 1 (best) BASIC11.77□□□□□ -0.531e-6■□□□□ 10
SFPQP23246 UCKL1-205ENST00000483710 524 ntTSL 311.21□□□□□ -0.611e-6■□□□□ 10
SFPQP23246 CBFA2T2-206ENST00000397800 7449 ntTSL 5 BASIC11.18□□□□□ -0.621e-6■□□□□ 10
SFPQP23246 MTHFD1L-210ENST00000478643 421 ntTSL 311.15□□□□□ -0.621e-6■□□□□ 10
SFPQP23246 LRRC8D-202ENST00000394593 3345 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.642e-8■□□□□ 10
SFPQP23246 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC10.63□□□□□ -0.711e-6■□□□□ 10
SFPQP23246 MTHFD1L-212ENST00000618312 3159 ntTSL 5 BASIC10.18□□□□□ -0.781e-6■□□□□ 10
SFPQP23246 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC9.63□□□□□ -0.871e-6■□□□□ 10
SFPQP23246 LRRC8D-203ENST00000414841 666 ntTSL 39.1□□□□□ -0.952e-8■□□□□ 10
SFPQP23246 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC8.67□□□□□ -1.021e-6■□□□□ 10
SFPQP23246 CUX1-219ENST00000606749 601 ntTSL 48.53□□□□□ -1.041e-6■□□□□ 10
SFPQP23246 SLC39A14-208ENST00000519960 467 ntTSL 48.44□□□□□ -1.062e-8■□□□□ 10
SFPQP23246 LRRC8D-204ENST00000441269 905 ntTSL 36.14□□□□□ -1.432e-8■□□□□ 10
SFPQP23246 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.37□□□□□ -1.712e-8■□□□□ 10
SFPQP23246 PPP4R2-204ENST00000476505 323 ntTSL 54.08□□□□□ -1.761e-6■□□□□ 10
SFPQP23246 PRKCA-204ENST00000583361 519 ntTSL 38.84□□□□□ -0.995e-7■□□□□ 10
SFPQP23246 AC005224.3-201ENST00000584683 2140 ntBASIC6.7□□□□□ -1.346e-6■□□□□ 10
SFPQP23246 PLXNB1-209ENST00000466353 626 ntTSL 320.85■□□□□ 0.931e-7■□□□□ 10
SFPQP23246 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.441e-7■□□□□ 10
SFPQP23246 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.011e-7■□□□□ 10
SFPQP23246 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.32■■□□□ 1.642e-6■□□□□ 10
SFPQP23246 MIR17HG-203ENST00000582141 2845 ntTSL 1 (best)20.31■□□□□ 0.842e-6■□□□□ 10
SFPQP23246 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC9.12□□□□□ -0.952e-6■□□□□ 10
SFPQP23246 GPHN-211ENST00000556020 562 ntTSL 419.23■□□□□ 0.674e-7■□□□□ 9.9
SFPQP23246 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.074e-7■□□□□ 9.9
SFPQP23246 GPHN-202ENST00000459628 1723 ntTSL 2 BASIC13.99□□□□□ -0.174e-7■□□□□ 9.9
SFPQP23246 GPHN-201ENST00000315266 4193 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.594e-7■□□□□ 9.9
SFPQP23246 GPHN-206ENST00000553936 574 ntTSL 37.45□□□□□ -1.224e-7■□□□□ 9.9
SFPQP23246 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.11□□□□□ -1.434e-7■□□□□ 9.9
SFPQP23246 GPHN-215ENST00000557654 503 ntTSL 45.9□□□□□ -1.464e-7■□□□□ 9.9
SFPQP23246 GPHN-210ENST00000555668 550 ntTSL 44.32□□□□□ -1.724e-7■□□□□ 9.9
SFPQP23246 GPHN-214ENST00000556633 512 ntTSL 34.18□□□□□ -1.744e-7■□□□□ 9.9
SFPQP23246 EEF1D-237ENST00000531281 813 ntTSL 219.22■□□□□ 0.678e-8■□□□□ 9.9
SFPQP23246 EEF1D-239ENST00000531670 926 ntTSL 317.33■□□□□ 0.368e-8■□□□□ 9.9
SFPQP23246 CARHSP1-210ENST00000567908 565 ntTSL 215.52■□□□□ 0.081e-6■□□□□ 9.9
SFPQP23246 TRIO-204ENST00000502816 736 ntTSL 227.68■■■□□ 2.029e-7■□□□□ 9.8
SFPQP23246 TRIO-207ENST00000505971 605 ntTSL 322.84■■□□□ 1.259e-7■□□□□ 9.8
SFPQP23246 TEAD4-207ENST00000543035 801 ntTSL 528.99■■■□□ 2.233e-7■□□□□ 9.8
SFPQP23246 TEAD4-206ENST00000540314 578 ntTSL 419.81■□□□□ 0.763e-7■□□□□ 9.8
SFPQP23246 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.37■□□□□ 0.693e-7■□□□□ 9.8
SFPQP23246 TEAD4-205ENST00000536826 570 ntTSL 418.89■□□□□ 0.613e-7■□□□□ 9.8
SFPQP23246 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.553e-7■□□□□ 9.8
SFPQP23246 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.75■□□□□ 0.273e-7■□□□□ 9.8
SFPQP23246 TEAD4-204ENST00000443986 641 ntTSL 314.28□□□□□ -0.123e-7■□□□□ 9.8
SFPQP23246 AC007608.4-201ENST00000623140 3365 ntBASIC13.94□□□□□ -0.182e-21■□□□□ 9.8
SFPQP23246 FOXN3-203ENST00000553353 366 ntTSL 33.66□□□□□ -1.822e-6■□□□□ 9.8
SFPQP23246 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.568e-9■□□□□ 9.8
SFPQP23246 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.48■□□□□ 0.231e-6■□□□□ 9.8
SFPQP23246 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC11.91□□□□□ -0.51e-6■□□□□ 9.8
SFPQP23246 NEDD4L-236ENST00000592846 484 ntTSL 45.92□□□□□ -1.462e-7■□□□□ 9.8
SFPQP23246 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.443e-8■□□□□ 9.7
SFPQP23246 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.763e-16■□□□□ 9.7
SFPQP23246 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.723e-16■□□□□ 9.7
SFPQP23246 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.243e-16■□□□□ 9.7
SFPQP23246 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.671e-6■□□□□ 9.7
SFPQP23246 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.611e-6■□□□□ 9.7
SFPQP23246 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.39■□□□□ 0.221e-6■□□□□ 9.7
SFPQP23246 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC16■□□□□ 0.151e-6■□□□□ 9.7
SFPQP23246 HECTD1-213ENST00000556224 3267 ntTSL 515.72■□□□□ 0.111e-6■□□□□ 9.7
SFPQP23246 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.021e-6■□□□□ 9.7
SFPQP23246 FOXP1-205ENST00000468577 1842 ntTSL 5 BASIC13.25□□□□□ -0.291e-6■□□□□ 9.7
SFPQP23246 HECTD1-202ENST00000553616 570 ntTSL 25.91□□□□□ -1.461e-6■□□□□ 9.7
SFPQP23246 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.773e-6■□□□□ 9.6
SFPQP23246 ASPSCR1-203ENST00000344865 1041 ntTSL 225.18■■□□□ 1.623e-6■□□□□ 9.6
SFPQP23246 SDC1-205ENST00000447124 591 ntTSL 423.18■■□□□ 1.35e-6■□□□□ 9.6
SFPQP23246 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.1■■□□□ 1.293e-6■□□□□ 9.6
SFPQP23246 PKP4-209ENST00000479398 550 ntTSL 523.06■■□□□ 1.283e-6■□□□□ 9.6
SFPQP23246 TMEM135-204ENST00000526733 496 ntTSL 220.37■□□□□ 0.853e-6■□□□□ 9.6
SFPQP23246 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.98■□□□□ 0.793e-6■□□□□ 9.6
SFPQP23246 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.81■□□□□ 0.765e-6■□□□□ 9.6
SFPQP23246 ASPSCR1-209ENST00000581484 1001 ntTSL 219.21■□□□□ 0.673e-6■□□□□ 9.6
SFPQP23246 SUN1-222ENST00000457861 2975 ntTSL 218.69■□□□□ 0.583e-6■□□□□ 9.6
SFPQP23246 ASPSCR1-207ENST00000579684 564 ntTSL 318.61■□□□□ 0.573e-6■□□□□ 9.6
SFPQP23246 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.72■□□□□ 0.433e-6■□□□□ 9.6
SFPQP23246 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.285e-6■□□□□ 9.6
Retrieved 100 of 4,991 protein–RNA pairs in 148.8 ms