RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 NISCHQ9Y2I1 1504 aa18.95■□□□□ 0.62
CUX1-219ENST00000606749 ABCC9O60706 1549 aa16.91■□□□□ 0.3
CUX1-219ENST00000606749 CCDC180Q9P1Z9 1646 aa16.9■□□□□ 0.3
CUX1-219ENST00000606749 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
CUX1-219ENST00000606749 DCAF8L2P0C7V8 631 aa16.05■□□□□ 0.16
CUX1-219ENST00000606749 NACADO15069 1562 aa16.01■□□□□ 0.15
CUX1-219ENST00000606749 DNAJC5BQ9UF47 199 aa15.9■□□□□ 0.14
CUX1-219ENST00000606749 MYO15BQ96JP2 1530 aa15.83■□□□□ 0.12
CUX1-219ENST00000606749 PABPN1Q86U42 306 aaKnown RBP eCLIP15.82■□□□□ 0.12
CUX1-219ENST00000606749 UNC13AQ9UPW8 1703 aa15.7■□□□□ 0.1
CUX1-219ENST00000606749 ZCCHC6Q5VYS8 1495 aaKnown RBP15.69■□□□□ 0.1
CUX1-219ENST00000606749 BICRAQ9NZM4 1560 aa15.64■□□□□ 0.09
CUX1-219ENST00000606749 DCAF1Q9Y4B6 1507 aa15.63■□□□□ 0.09
CUX1-219ENST00000606749 SCRIBQ14160 1630 aa15.43■□□□□ 0.06
CUX1-219ENST00000606749 SHROOM4Q9ULL8 1493 aa15.4■□□□□ 0.06
CUX1-219ENST00000606749 CC2D2AQ9P2K1 1620 aa15.26■□□□□ 0.03
CUX1-219ENST00000606749 EIF4G1Q04637 1599 aaKnown RBP15.24■□□□□ 0.03
CUX1-219ENST00000606749 CECR2Q9BXF3 1484 aa15.23■□□□□ 0.03
CUX1-219ENST00000606749 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
CUX1-219ENST00000606749 ATAD2BQ9ULI0 1458 aa14.77□□□□□ -0.04
CUX1-219ENST00000606749 SMARCA4P51532 1647 aa14.74□□□□□ -0.05
CUX1-219ENST00000606749 SMARCA2P51531 1590 aa14.71□□□□□ -0.05
CUX1-219ENST00000606749 BAZ1AQ9NRL2 1556 aaPredicted RBP14.68□□□□□ -0.06
CUX1-219ENST00000606749 HMGXB3Q12766 1538 aa14.66□□□□□ -0.06
CUX1-219ENST00000606749 BAZ1BQ9UIG0 1483 aaKnown RBP14.62□□□□□ -0.07
CUX1-219ENST00000606749 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
CUX1-219ENST00000606749 PEG3Q9GZU2 1588 aa14.6□□□□□ -0.07
CUX1-219ENST00000606749 ERCC6Q03468 1493 aa14.58□□□□□ -0.08
CUX1-219ENST00000606749 NESP48681 1621 aa14.55□□□□□ -0.08
CUX1-219ENST00000606749 DNAJC5Q9H3Z4 198 aa14.54□□□□□ -0.08
CUX1-219ENST00000606749 CUX2O14529 1486 aa14.54□□□□□ -0.08
CUX1-219ENST00000606749 LAMC3Q9Y6N6 1575 aa14.43□□□□□ -0.1
CUX1-219ENST00000606749 WIZO95785 1651 aa14.41□□□□□ -0.1
CUX1-219ENST00000606749 PDS5BQ9NTI5 1447 aa14.39□□□□□ -0.11
CUX1-219ENST00000606749 CADPSQ9ULU8 1353 aa14.38□□□□□ -0.11
CUX1-219ENST00000606749 RSF1Q96T23 1441 aaPredicted RBP14.34□□□□□ -0.11
CUX1-219ENST00000606749 THOC2Q8NI27 1593 aaKnown RBP14.34□□□□□ -0.11
CUX1-219ENST00000606749 KIF21AQ7Z4S6 1674 aa14.3□□□□□ -0.12
CUX1-219ENST00000606749 MRC2Q9UBG0 1479 aa14.23□□□□□ -0.13
CUX1-219ENST00000606749 TOP2AP11388 1531 aaKnown RBP14.22□□□□□ -0.13
CUX1-219ENST00000606749 CFTRP13569 1480 aa14.21□□□□□ -0.13
CUX1-219ENST00000606749 FANCD2Q9BXW9 1451 aa14.19□□□□□ -0.14
CUX1-219ENST00000606749 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
CUX1-219ENST00000606749 WDR62O43379 1518 aa14.18□□□□□ -0.14
CUX1-219ENST00000606749 CCDC88BA6NC98 1476 aa14.12□□□□□ -0.15
CUX1-219ENST00000606749 URB2Q14146 1524 aaKnown RBP14.07□□□□□ -0.16
CUX1-219ENST00000606749 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
CUX1-219ENST00000606749 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
CUX1-219ENST00000606749 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
CUX1-219ENST00000606749 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
CUX1-219ENST00000606749 IFT140Q96RY7 1462 aa13.91□□□□□ -0.18
CUX1-219ENST00000606749 ABCC8Q09428 1581 aa13.91□□□□□ -0.18
CUX1-219ENST00000606749 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.19
CUX1-219ENST00000606749 DNMBPQ6XZF7 1577 aa13.85□□□□□ -0.19
CUX1-219ENST00000606749 SUPT5HO00267 1087 aaKnown RBP13.8□□□□□ -0.2
CUX1-219ENST00000606749 AQRO60306 1485 aaKnown RBP eCLIP13.8□□□□□ -0.2
CUX1-219ENST00000606749 POLA1P09884 1462 aaPredicted RBP13.78□□□□□ -0.2
CUX1-219ENST00000606749 TARBP1Q13395 1621 aaKnown RBP13.78□□□□□ -0.2
CUX1-219ENST00000606749 SOGA1O94964 1423 aa13.77□□□□□ -0.21
CUX1-219ENST00000606749 EIF4G3O43432 1585 aaKnown RBP13.76□□□□□ -0.21
CUX1-219ENST00000606749 RAD54L2Q9Y4B4 1467 aa13.75□□□□□ -0.21
CUX1-219ENST00000606749 TDRD9Q8NDG6 1382 aaKnown RBP13.73□□□□□ -0.21
CUX1-219ENST00000606749 FBLN2P98095 1184 aa13.72□□□□□ -0.21
CUX1-219ENST00000606749 CUX1P39880 1505 aa13.71□□□□□ -0.21
CUX1-219ENST00000606749 FGD5Q6ZNL6 1462 aa13.71□□□□□ -0.21
CUX1-219ENST00000606749 RIMBP3CA6NJZ7 1639 aa13.68□□□□□ -0.22
CUX1-219ENST00000606749 RIMBP3BA6NNM3 1639 aa13.68□□□□□ -0.22
CUX1-219ENST00000606749 RIMBP3Q9UFD9 1639 aa13.68□□□□□ -0.22
CUX1-219ENST00000606749 ARHGEF11O15085 1522 aa13.65□□□□□ -0.22
CUX1-219ENST00000606749 CHD1O14646 1710 aa13.64□□□□□ -0.23
CUX1-219ENST00000606749 CYB5RLQ6IPT4 315 aa13.63□□□□□ -0.23
CUX1-219ENST00000606749 CHMP7Q8WUX9 453 aaPredicted RBP13.63□□□□□ -0.23
CUX1-219ENST00000606749 WDR97A6NE52 1622 aa13.62□□□□□ -0.23
CUX1-219ENST00000606749 SNAPC4Q5SXM2 1469 aa13.61□□□□□ -0.23
CUX1-219ENST00000606749 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
CUX1-219ENST00000606749 MAGI1Q96QZ7 1491 aaPredicted RBP13.59□□□□□ -0.23
CUX1-219ENST00000606749 GAPVD1Q14C86 1478 aa13.58□□□□□ -0.24
CUX1-219ENST00000606749 ABCA10Q8WWZ4 1543 aa13.56□□□□□ -0.24
CUX1-219ENST00000606749 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
CUX1-219ENST00000606749 WRNQ14191 1432 aaPredicted RBP eCLIP13.54□□□□□ -0.24
CUX1-219ENST00000606749 ARAP1Q96P48 1450 aa13.54□□□□□ -0.24
CUX1-219ENST00000606749 CLASP1Q7Z460 1538 aa13.52□□□□□ -0.25
CUX1-219ENST00000606749 SYNJ1O43426 1573 aa13.51□□□□□ -0.25
CUX1-219ENST00000606749 ABCA5Q8WWZ7 1642 aa13.5□□□□□ -0.25
CUX1-219ENST00000606749 PBRM1Q86U86 1689 aa13.49□□□□□ -0.25
CUX1-219ENST00000606749 TOP2BQ02880 1626 aa13.49□□□□□ -0.25
CUX1-219ENST00000606749 BIVM-ERCC5R4GMW8 1640 aa13.46□□□□□ -0.25
CUX1-219ENST00000606749 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
CUX1-219ENST00000606749 GRIN2AQ12879 1464 aa13.42□□□□□ -0.26
CUX1-219ENST00000606749 FHAD1B1AJZ9 1412 aa13.4□□□□□ -0.26
CUX1-219ENST00000606749 NUP160Q12769 1436 aa13.39□□□□□ -0.27
CUX1-219ENST00000606749 ADAMTS12P58397 1594 aa13.38□□□□□ -0.27
CUX1-219ENST00000606749 ERICH3Q5RHP9 1530 aa13.38□□□□□ -0.27
CUX1-219ENST00000606749 CEP170Q5SW79 1584 aa13.36□□□□□ -0.27
CUX1-219ENST00000606749 ERCC6L2Q5T890 1561 aa13.33□□□□□ -0.28
CUX1-219ENST00000606749 JPH4Q96JJ6 628 aa13.32□□□□□ -0.28
CUX1-219ENST00000606749 IGF1RP08069 1367 aa13.3□□□□□ -0.28
CUX1-219ENST00000606749 SHROOM2Q13796 1616 aa13.28□□□□□ -0.28
CUX1-219ENST00000606749 PRG4Q92954 1404 aaPredicted RBP13.27□□□□□ -0.29
CUX1-219ENST00000606749 KIF27Q86VH2 1401 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms