Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.184e-15■□□□□ 10
CDC40O60508 TAF15-203ENST00000603393 1214 ntTSL 1 (best)15.62■□□□□ 0.095e-8■□□□□ 10
CDC40O60508 TAF15-214ENST00000605649 776 ntTSL 515.62■□□□□ 0.095e-8■□□□□ 10
CDC40O60508 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.095e-8■□□□□ 10
CDC40O60508 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.295e-8■□□□□ 10
CDC40O60508 SON-208ENST00000455528 8394 ntTSL 1 (best)12.44□□□□□ -0.428e-7■□□□□ 10
CDC40O60508 TAF15-213ENST00000605197 760 ntTSL 212.24□□□□□ -0.455e-8■□□□□ 10
CDC40O60508 TAF15-212ENST00000604879 808 ntTSL 512.24□□□□□ -0.455e-8■□□□□ 10
CDC40O60508 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC11.55□□□□□ -0.568e-7■□□□□ 10
CDC40O60508 PRPF8-214ENST00000576585 2157 ntTSL 211.49□□□□□ -0.575e-8■□□□□ 10
CDC40O60508 DIDO1-205ENST00000370371 2833 ntTSL 1 (best) BASIC11.44□□□□□ -0.584e-15■□□□□ 10
CDC40O60508 ATN1-202ENST00000396684 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.645e-8■□□□□ 10
CDC40O60508 TAF15-201ENST00000603067 580 ntTSL 56.02□□□□□ -1.455e-8■□□□□ 10
CDC40O60508 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.95□□□□□ -1.628e-7■□□□□ 10
CDC40O60508 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.57■□□□□ 0.563e-7■□□□□ 10
CDC40O60508 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.383e-7■□□□□ 10
CDC40O60508 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.353e-7■□□□□ 10
CDC40O60508 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.54■□□□□ 0.083e-7■□□□□ 10
CDC40O60508 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.16■□□□□ 0.023e-7■□□□□ 10
CDC40O60508 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.47□□□□□ -0.253e-7■□□□□ 10
CDC40O60508 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.263e-7■□□□□ 10
CDC40O60508 NCL-210ENST00000494618 910 ntTSL 22.3□□□□□ -2.041e-7■□□□□ 10
CDC40O60508 LINC00106-201ENST00000430235 370 ntTSL 2 BASIC11.29□□□□□ -0.69e-8■□□□□ 10
CDC40O60508 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC11.96□□□□□ -0.498e-8■□□□□ 10
CDC40O60508 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.049e-7■□□□□ 10
CDC40O60508 FUS-213ENST00000570090 544 ntTSL 216.76■□□□□ 0.272e-12■□□□□ 10
CDC40O60508 SEMA3B-215ENST00000621029 934 ntTSL 526.88■■□□□ 1.893e-7■□□□□ 10
CDC40O60508 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.353e-7■□□□□ 10
CDC40O60508 SEMA3B-211ENST00000612509 1061 ntTSL 516.6■□□□□ 0.253e-7■□□□□ 10
CDC40O60508 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.13e-7■□□□□ 10
CDC40O60508 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.023e-7■□□□□ 10
CDC40O60508 SEMA3B-207ENST00000441915 2710 ntTSL 1 (best)14.92□□□□□ -0.023e-7■□□□□ 10
CDC40O60508 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.143e-7■□□□□ 10
CDC40O60508 SEMA3B-214ENST00000619119 3158 ntTSL 514.09□□□□□ -0.153e-7■□□□□ 10
CDC40O60508 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.286e-9■□□□□ 9.9
CDC40O60508 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.23■□□□□ 0.196e-9■□□□□ 9.9
CDC40O60508 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.176e-9■□□□□ 9.9
CDC40O60508 ARF1-209ENST00000478424 1059 ntTSL 223.21■■□□□ 1.314e-6■□□□□ 9.9
CDC40O60508 HEXDC-210ENST00000582131 942 ntTSL 522.77■■□□□ 1.244e-6■□□□□ 9.9
CDC40O60508 ARF1-208ENST00000478336 930 ntTSL 221.93■■□□□ 1.14e-6■□□□□ 9.9
CDC40O60508 HEXDC-215ENST00000585077 1139 ntTSL 221.37■■□□□ 1.014e-6■□□□□ 9.9
CDC40O60508 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.93■□□□□ 0.944e-6■□□□□ 9.9
CDC40O60508 HEXDC-212ENST00000582429 1824 ntTSL 220.53■□□□□ 0.884e-6■□□□□ 9.9
CDC40O60508 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.884e-6■□□□□ 9.9
CDC40O60508 INTS11-223ENST00000498173 1589 ntTSL 219.83■□□□□ 0.774e-6■□□□□ 9.9
CDC40O60508 ARF1-206ENST00000473949 578 ntTSL 519.35■□□□□ 0.694e-6■□□□□ 9.9
CDC40O60508 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.17■□□□□ 0.664e-6■□□□□ 9.9
CDC40O60508 HEXDC-213ENST00000583354 686 ntTSL 518.54■□□□□ 0.564e-6■□□□□ 9.9
CDC40O60508 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.534e-6■□□□□ 9.9
CDC40O60508 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.35■□□□□ 0.534e-6■□□□□ 9.9
CDC40O60508 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.99■□□□□ 0.474e-6■□□□□ 9.9
CDC40O60508 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.8■□□□□ 0.444e-6■□□□□ 9.9
CDC40O60508 INTS11-235ENST00000527719 750 ntTSL 517.52■□□□□ 0.44e-6■□□□□ 9.9
CDC40O60508 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.384e-6■□□□□ 9.9
CDC40O60508 INTS11-230ENST00000526332 579 ntTSL 417.2■□□□□ 0.344e-6■□□□□ 9.9
CDC40O60508 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.12■□□□□ 0.334e-6■□□□□ 9.9
CDC40O60508 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.99■□□□□ 0.314e-6■□□□□ 9.9
CDC40O60508 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.244e-6■□□□□ 9.9
CDC40O60508 INTS11-221ENST00000496353 2428 ntTSL 216.35■□□□□ 0.214e-6■□□□□ 9.9
CDC40O60508 INTS11-242ENST00000531377 816 ntTSL 516.24■□□□□ 0.194e-6■□□□□ 9.9
CDC40O60508 INTS11-218ENST00000488042 1134 ntTSL 216.14■□□□□ 0.174e-6■□□□□ 9.9
CDC40O60508 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.174e-6■□□□□ 9.9
CDC40O60508 INTS11-237ENST00000530031 800 ntTSL 515.92■□□□□ 0.144e-6■□□□□ 9.9
CDC40O60508 INTS11-207ENST00000434694 1056 ntTSL 515.87■□□□□ 0.134e-6■□□□□ 9.9
CDC40O60508 ARF1-207ENST00000477451 789 ntTSL 515.63■□□□□ 0.094e-6■□□□□ 9.9
CDC40O60508 TSPAN9-204ENST00000444315 570 ntTSL 415.58■□□□□ 0.084e-6■□□□□ 9.9
CDC40O60508 HEXDC-204ENST00000578130 853 ntTSL 215.5■□□□□ 0.074e-6■□□□□ 9.9
CDC40O60508 INTS11-232ENST00000526904 551 ntTSL 415.42■□□□□ 0.064e-6■□□□□ 9.9
CDC40O60508 INTS11-243ENST00000532772 1618 ntTSL 515.29■□□□□ 0.044e-6■□□□□ 9.9
CDC40O60508 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.86□□□□□ -0.034e-6■□□□□ 9.9
CDC40O60508 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.77□□□□□ -0.054e-6■□□□□ 9.9
CDC40O60508 ARF1-202ENST00000469235 678 ntTSL 314.56□□□□□ -0.084e-6■□□□□ 9.9
CDC40O60508 ASGR2-205ENST00000574868 1202 ntTSL 514.45□□□□□ -0.14e-12■□□□□ 9.9
CDC40O60508 INTS11-201ENST00000323275 2450 ntTSL 1 (best)14.41□□□□□ -0.14e-6■□□□□ 9.9
CDC40O60508 INTS11-206ENST00000430786 849 ntTSL 514.34□□□□□ -0.114e-6■□□□□ 9.9
CDC40O60508 ARF1-203ENST00000470558 820 ntTSL 214.32□□□□□ -0.124e-6■□□□□ 9.9
CDC40O60508 ARF1-212ENST00000497165 675 ntTSL 314.32□□□□□ -0.124e-6■□□□□ 9.9
CDC40O60508 INTS11-210ENST00000458452 2571 ntTSL 214.29□□□□□ -0.124e-6■□□□□ 9.9
CDC40O60508 INTS11-233ENST00000527098 2004 ntTSL 214.13□□□□□ -0.154e-6■□□□□ 9.9
CDC40O60508 INTS11-236ENST00000528879 1524 ntTSL 514.08□□□□□ -0.164e-6■□□□□ 9.9
CDC40O60508 ARF1-210ENST00000482962 597 ntTSL 313.71□□□□□ -0.214e-6■□□□□ 9.9
CDC40O60508 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.6□□□□□ -0.234e-6■□□□□ 9.9
CDC40O60508 INTS11-227ENST00000525603 738 ntTSL 313.38□□□□□ -0.274e-6■□□□□ 9.9
CDC40O60508 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.35□□□□□ -0.274e-6■□□□□ 9.9
CDC40O60508 USP7-208ENST00000563961 4533 ntTSL 513.26□□□□□ -0.294e-6■□□□□ 9.9
CDC40O60508 ARF1-204ENST00000470670 712 ntTSL 313.25□□□□□ -0.294e-6■□□□□ 9.9
CDC40O60508 ASGR2-204ENST00000450034 932 ntTSL 212.99□□□□□ -0.334e-12■□□□□ 9.9
CDC40O60508 INTS11-229ENST00000526113 591 ntTSL 512.65□□□□□ -0.384e-6■□□□□ 9.9
CDC40O60508 EIF4A2-206ENST00000441007 480 ntTSL 312.61□□□□□ -0.394e-6■□□□□ 9.9
CDC40O60508 HEXDC-205ENST00000578616 862 ntTSL 312.38□□□□□ -0.434e-6■□□□□ 9.9
CDC40O60508 ARF1-211ENST00000490705 881 ntTSL 312.34□□□□□ -0.434e-6■□□□□ 9.9
CDC40O60508 ARF1-205ENST00000473546 291 ntTSL 212.21□□□□□ -0.454e-6■□□□□ 9.9
CDC40O60508 EIF4A2-215ENST00000467585 570 ntTSL 211.9□□□□□ -0.54e-6■□□□□ 9.9
CDC40O60508 EIF4A2-208ENST00000445596 600 ntTSL 211.8□□□□□ -0.524e-6■□□□□ 9.9
CDC40O60508 TSPAN9-201ENST00000011898 4323 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.534e-6■□□□□ 9.9
CDC40O60508 INTS11-231ENST00000526797 659 ntTSL 411.68□□□□□ -0.544e-6■□□□□ 9.9
CDC40O60508 TSPAN9-206ENST00000537971 4284 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.594e-6■□□□□ 9.9
CDC40O60508 RPS21-202ENST00000370562 1002 ntTSL 2 BASIC11.35□□□□□ -0.594e-6■□□□□ 9.9
CDC40O60508 RPS21-205ENST00000492356 429 ntTSL 1 (best)11.26□□□□□ -0.614e-6■□□□□ 9.9
CDC40O60508 RPS21-203ENST00000370592 401 ntTSL 211.16□□□□□ -0.624e-6■□□□□ 9.9
Retrieved 100 of 5,364 protein–RNA pairs in 28.7 ms