RNA–Protein interactions for RNA: ENST00000444315.6

TSPAN9-204, Transcript of tetraspanin 9, humanhuman

TSL 4

Gene TSPAN9, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN9-204ENST00000444315 NISCHQ9Y2I1 1504 aa40.77■■■■■ 4.12
TSPAN9-204ENST00000444315 CCDC180Q9P1Z9 1646 aa36.44■■■■□ 3.42
TSPAN9-204ENST00000444315 ABCC9O60706 1549 aa35.95■■■■□ 3.35
TSPAN9-204ENST00000444315 RB1CC1Q8TDY2 1594 aa34.46■■■■□ 3.11
TSPAN9-204ENST00000444315 DCAF8L2P0C7V8 631 aa34.45■■■■□ 3.11
TSPAN9-204ENST00000444315 NACADO15069 1562 aa34.28■■■■□ 3.08
TSPAN9-204ENST00000444315 ZCCHC6Q5VYS8 1495 aaKnown RBP33.89■■■■□ 3.02
TSPAN9-204ENST00000444315 MYO15BQ96JP2 1530 aa33.86■■■■□ 3.01
TSPAN9-204ENST00000444315 UNC13AQ9UPW8 1703 aa33.66■■■□□ 2.98
TSPAN9-204ENST00000444315 DCAF1Q9Y4B6 1507 aa33.64■■■□□ 2.98
TSPAN9-204ENST00000444315 PABPN1Q86U42 306 aaKnown RBP eCLIP33.54■■■□□ 2.96
TSPAN9-204ENST00000444315 SCRIBQ14160 1630 aa33.33■■■□□ 2.93
TSPAN9-204ENST00000444315 BICRAQ9NZM4 1560 aa33.27■■■□□ 2.92
TSPAN9-204ENST00000444315 DNAJC5BQ9UF47 199 aa33.02■■■□□ 2.88
TSPAN9-204ENST00000444315 SHROOM4Q9ULL8 1493 aa32.93■■■□□ 2.86
TSPAN9-204ENST00000444315 EIF4G1Q04637 1599 aaKnown RBP32.51■■■□□ 2.79
TSPAN9-204ENST00000444315 CC2D2AQ9P2K1 1620 aa32.47■■■□□ 2.79
TSPAN9-204ENST00000444315 CECR2Q9BXF3 1484 aa32.3■■■□□ 2.76
TSPAN9-204ENST00000444315 SMARCA4P51532 1647 aa31.75■■■□□ 2.67
TSPAN9-204ENST00000444315 BAZ1AQ9NRL2 1556 aaPredicted RBP31.69■■■□□ 2.66
TSPAN9-204ENST00000444315 SMARCA2P51531 1590 aa31.62■■■□□ 2.65
TSPAN9-204ENST00000444315 ATAD2BQ9ULI0 1458 aa31.58■■■□□ 2.65
TSPAN9-204ENST00000444315 NCAPD3P42695 1498 aa31.54■■■□□ 2.64
TSPAN9-204ENST00000444315 HMGXB3Q12766 1538 aa31.44■■■□□ 2.62
TSPAN9-204ENST00000444315 BAZ1BQ9UIG0 1483 aaKnown RBP31.43■■■□□ 2.62
TSPAN9-204ENST00000444315 MROH2BQ7Z745 1585 aa31.43■■■□□ 2.62
TSPAN9-204ENST00000444315 PEG3Q9GZU2 1588 aa31.32■■■□□ 2.6
TSPAN9-204ENST00000444315 WIZO95785 1651 aa31.16■■■□□ 2.58
TSPAN9-204ENST00000444315 ERCC6Q03468 1493 aa31.12■■■□□ 2.57
TSPAN9-204ENST00000444315 NESP48681 1621 aa30.98■■■□□ 2.55
TSPAN9-204ENST00000444315 RSF1Q96T23 1441 aaPredicted RBP30.94■■■□□ 2.54
TSPAN9-204ENST00000444315 LAMC3Q9Y6N6 1575 aa30.88■■■□□ 2.53
TSPAN9-204ENST00000444315 TOP2AP11388 1531 aaKnown RBP30.78■■■□□ 2.52
TSPAN9-204ENST00000444315 CUX2O14529 1486 aa30.72■■■□□ 2.51
TSPAN9-204ENST00000444315 PDS5BQ9NTI5 1447 aa30.71■■■□□ 2.51
TSPAN9-204ENST00000444315 KIF21AQ7Z4S6 1674 aa30.68■■■□□ 2.5
TSPAN9-204ENST00000444315 CADPSQ9ULU8 1353 aa30.68■■■□□ 2.5
TSPAN9-204ENST00000444315 THOC2Q8NI27 1593 aaKnown RBP30.56■■■□□ 2.48
TSPAN9-204ENST00000444315 CEP164Q9UPV0 1460 aa30.43■■■□□ 2.46
TSPAN9-204ENST00000444315 CFTRP13569 1480 aa30.41■■■□□ 2.46
TSPAN9-204ENST00000444315 FANCD2Q9BXW9 1451 aa30.39■■■□□ 2.46
TSPAN9-204ENST00000444315 MRC2Q9UBG0 1479 aa30.39■■■□□ 2.46
TSPAN9-204ENST00000444315 CCDC88BA6NC98 1476 aa30.38■■■□□ 2.45
TSPAN9-204ENST00000444315 PRDM2Q13029 1718 aa30.33■■■□□ 2.45
TSPAN9-204ENST00000444315 WDR62O43379 1518 aa30.25■■■□□ 2.43
TSPAN9-204ENST00000444315 SUPT5HO00267 1087 aaKnown RBP30.21■■■□□ 2.43
TSPAN9-204ENST00000444315 URB2Q14146 1524 aaKnown RBP30.05■■■□□ 2.4
TSPAN9-204ENST00000444315 DNAJC5Q9H3Z4 198 aa30■■■□□ 2.39
TSPAN9-204ENST00000444315 ABCC8Q09428 1581 aa29.86■■■□□ 2.37
TSPAN9-204ENST00000444315 TOPBP1Q92547 1522 aa29.86■■■□□ 2.37
TSPAN9-204ENST00000444315 DNMBPQ6XZF7 1577 aa29.83■■■□□ 2.37
TSPAN9-204ENST00000444315 IFT140Q96RY7 1462 aa29.75■■■□□ 2.35
TSPAN9-204ENST00000444315 ZNF608Q9ULD9 1512 aaPredicted RBP29.61■■■□□ 2.33
TSPAN9-204ENST00000444315 POLA1P09884 1462 aaPredicted RBP29.57■■■□□ 2.32
TSPAN9-204ENST00000444315 EIF4G3O43432 1585 aaKnown RBP29.56■■■□□ 2.32
TSPAN9-204ENST00000444315 CUX1P39880 1505 aa29.51■■■□□ 2.32
TSPAN9-204ENST00000444315 TARBP1Q13395 1621 aaKnown RBP29.51■■■□□ 2.31
TSPAN9-204ENST00000444315 FGD5Q6ZNL6 1462 aa29.5■■■□□ 2.31
TSPAN9-204ENST00000444315 SOGA1O94964 1423 aa29.48■■■□□ 2.31
TSPAN9-204ENST00000444315 RAD54L2Q9Y4B4 1467 aa29.48■■■□□ 2.31
TSPAN9-204ENST00000444315 OSCARQ8IYS5 282 aa29.43■■■□□ 2.3
TSPAN9-204ENST00000444315 AQRO60306 1485 aaKnown RBP eCLIP29.42■■■□□ 2.36e-6■■■■□ 23.2
TSPAN9-204ENST00000444315 TDRD9Q8NDG6 1382 aaKnown RBP29.35■■■□□ 2.29
TSPAN9-204ENST00000444315 FBLN2P98095 1184 aa29.32■■■□□ 2.28
TSPAN9-204ENST00000444315 WDR97A6NE52 1622 aa29.31■■■□□ 2.28
TSPAN9-204ENST00000444315 WRNQ14191 1432 aaPredicted RBP eCLIP29.28■■■□□ 2.28
TSPAN9-204ENST00000444315 CHD1O14646 1710 aa29.28■■■□□ 2.28
TSPAN9-204ENST00000444315 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
TSPAN9-204ENST00000444315 TOP2BQ02880 1626 aa29.22■■■□□ 2.27
TSPAN9-204ENST00000444315 SNAPC4Q5SXM2 1469 aa29.2■■■□□ 2.26
TSPAN9-204ENST00000444315 SYNJ1O43426 1573 aa29.2■■■□□ 2.26
TSPAN9-204ENST00000444315 PBRM1Q86U86 1689 aa29.19■■■□□ 2.26
TSPAN9-204ENST00000444315 GRIN2BQ13224 1484 aa29.17■■■□□ 2.26
TSPAN9-204ENST00000444315 TRIM41Q8WV44 630 aa29.17■■■□□ 2.26
TSPAN9-204ENST00000444315 GAPVD1Q14C86 1478 aa29.15■■■□□ 2.26
TSPAN9-204ENST00000444315 ABCA10Q8WWZ4 1543 aa29.15■■■□□ 2.26
TSPAN9-204ENST00000444315 MAGI1Q96QZ7 1491 aaPredicted RBP29.11■■■□□ 2.25
TSPAN9-204ENST00000444315 CHMP7Q8WUX9 453 aaPredicted RBP29.11■■■□□ 2.25
TSPAN9-204ENST00000444315 ABCA5Q8WWZ7 1642 aa29.08■■■□□ 2.25
TSPAN9-204ENST00000444315 RIMBP3CA6NJZ7 1639 aa29.01■■■□□ 2.23
TSPAN9-204ENST00000444315 RIMBP3BA6NNM3 1639 aa29.01■■■□□ 2.23
TSPAN9-204ENST00000444315 RIMBP3Q9UFD9 1639 aa29.01■■■□□ 2.23
TSPAN9-204ENST00000444315 SYNJ2O15056 1496 aa29■■■□□ 2.23
TSPAN9-204ENST00000444315 ARHGEF11O15085 1522 aa28.94■■■□□ 2.22
TSPAN9-204ENST00000444315 ADAMTS12P58397 1594 aa28.87■■■□□ 2.21
TSPAN9-204ENST00000444315 ERICH3Q5RHP9 1530 aa28.82■■■□□ 2.2
TSPAN9-204ENST00000444315 CLASP1Q7Z460 1538 aa28.81■■■□□ 2.2
TSPAN9-204ENST00000444315 GRIN2AQ12879 1464 aa28.78■■■□□ 2.2
TSPAN9-204ENST00000444315 FHAD1B1AJZ9 1412 aa28.78■■■□□ 2.2
TSPAN9-204ENST00000444315 CYB5RLQ6IPT4 315 aa28.75■■■□□ 2.19
TSPAN9-204ENST00000444315 KIF27Q86VH2 1401 aa28.72■■■□□ 2.19
TSPAN9-204ENST00000444315 ARAP1Q96P48 1450 aa28.66■■■□□ 2.18
TSPAN9-204ENST00000444315 CEP170Q5SW79 1584 aa28.65■■■□□ 2.18
TSPAN9-204ENST00000444315 CUL7Q14999 1698 aa28.6■■■□□ 2.17
TSPAN9-204ENST00000444315 NUP160Q12769 1436 aa28.59■■■□□ 2.17
TSPAN9-204ENST00000444315 IGF1RP08069 1367 aa28.5■■■□□ 2.15
TSPAN9-204ENST00000444315 RUSC2Q8N2Y8 1516 aa28.44■■■□□ 2.14
TSPAN9-204ENST00000444315 SHROOM2Q13796 1616 aa28.43■■■□□ 2.14
TSPAN9-204ENST00000444315 CARMIL1Q5VZK9 1371 aa28.42■■■□□ 2.14
TSPAN9-204ENST00000444315 ERCC6L2Q5T890 1561 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms