Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 AC063926.3-201ENST00000624734 5658 ntBASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CHKB-CPT1BH3BT56 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 AC106820.2-201ENST00000563775 3264 ntBASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 AL133380.1-201ENST00000506013 324 ntBASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CHKB-CPT1BH3BT56 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CHKB-CPT1BH3BT56 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CHKB-CPT1BH3BT56 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
CHKB-CPT1BH3BT56 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CHKB-CPT1BH3BT56 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 MIR600HG-201ENST00000449175 5984 ntBASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CHKB-CPT1BH3BT56 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CHKB-CPT1BH3BT56 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms