RNA–Protein interactions for RNA: ENST00000221554.12

CCDC130-201, Transcript of coiled-coil domain containing 130, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC130, Length 1,792 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC130-201ENST00000221554 NISCHQ9Y2I1 1504 aa44.45■■■■■ 4.71
CCDC130-201ENST00000221554 CCDC180Q9P1Z9 1646 aa38.3■■■■□ 3.72
CCDC130-201ENST00000221554 ZCCHC6Q5VYS8 1495 aaKnown RBP37.56■■■■□ 3.6
CCDC130-201ENST00000221554 SHROOM4Q9ULL8 1493 aa37.09■■■■□ 3.53
CCDC130-201ENST00000221554 ABCC9O60706 1549 aa37.04■■■■□ 3.52
CCDC130-201ENST00000221554 DCAF1Q9Y4B6 1507 aa36.79■■■■□ 3.48
CCDC130-201ENST00000221554 DCAF8L2P0C7V8 631 aa36.4■■■■□ 3.42
CCDC130-201ENST00000221554 SUPT5HO00267 1087 aaKnown RBP36.36■■■■□ 3.41
CCDC130-201ENST00000221554 MYO15BQ96JP2 1530 aa35.91■■■■□ 3.34
CCDC130-201ENST00000221554 NACADO15069 1562 aa35.82■■■■□ 3.32
CCDC130-201ENST00000221554 RB1CC1Q8TDY2 1594 aa35.76■■■■□ 3.32
CCDC130-201ENST00000221554 CHIC1Q5VXU3 224 aa35.44■■■■□ 3.26
CCDC130-201ENST00000221554 UNC13AQ9UPW8 1703 aa35.25■■■■□ 3.23
CCDC130-201ENST00000221554 SCRIBQ14160 1630 aa35.25■■■■□ 3.23
CCDC130-201ENST00000221554 RSF1Q96T23 1441 aaPredicted RBP34.96■■■■□ 3.19
CCDC130-201ENST00000221554 BICRAQ9NZM4 1560 aa34.79■■■■□ 3.16
CCDC130-201ENST00000221554 PABPN1Q86U42 306 aaKnown RBP eCLIP34.69■■■■□ 3.14
CCDC130-201ENST00000221554 CECR2Q9BXF3 1484 aa34.4■■■■□ 3.1
CCDC130-201ENST00000221554 MROH2BQ7Z745 1585 aa34.35■■■■□ 3.09
CCDC130-201ENST00000221554 BAZ1AQ9NRL2 1556 aaPredicted RBP34.24■■■■□ 3.07
CCDC130-201ENST00000221554 TRIM41Q8WV44 630 aa34.15■■■■□ 3.06
CCDC130-201ENST00000221554 WIZO95785 1651 aa34.12■■■■□ 3.05
CCDC130-201ENST00000221554 LOC105371045A0A1W2PR82 267 aa34.11■■■■□ 3.05
CCDC130-201ENST00000221554 HRCP23327 699 aa33.93■■■■□ 3.02
CCDC130-201ENST00000221554 SMARCA4P51532 1647 aa33.88■■■■□ 3.01
CCDC130-201ENST00000221554 PCGF6Q9BYE7 350 aa33.88■■■■□ 3.01
CCDC130-201ENST00000221554 TOP2AP11388 1531 aaKnown RBP33.84■■■■□ 3.01
CCDC130-201ENST00000221554 EIF4G1Q04637 1599 aaKnown RBP33.77■■■■□ 3
CCDC130-201ENST00000221554 TRIM26Q12899 539 aaPredicted RBP33.65■■■□□ 2.98
CCDC130-201ENST00000221554 DNAJC5BQ9UF47 199 aa33.6■■■□□ 2.97
CCDC130-201ENST00000221554 CC2D2AQ9P2K1 1620 aa33.55■■■□□ 2.96
CCDC130-201ENST00000221554 CCDC88BA6NC98 1476 aa33.54■■■□□ 2.96
CCDC130-201ENST00000221554 SMARCA2P51531 1590 aa33.53■■■□□ 2.96
CCDC130-201ENST00000221554 FAM9AQ8IZU1 332 aaPredicted RBP33.49■■■□□ 2.95
CCDC130-201ENST00000221554 PEG3Q9GZU2 1588 aa33.44■■■□□ 2.94
CCDC130-201ENST00000221554 ATAD2BQ9ULI0 1458 aa33.18■■■□□ 2.9
CCDC130-201ENST00000221554 ABCC8Q09428 1581 aa33.16■■■□□ 2.9
CCDC130-201ENST00000221554 EEA1Q15075 1411 aa33.14■■■□□ 2.9
CCDC130-201ENST00000221554 NCAPD3P42695 1498 aa33.04■■■□□ 2.88
CCDC130-201ENST00000221554 ZEB1P37275 1124 aaPredicted RBP33.04■■■□□ 2.88
CCDC130-201ENST00000221554 BAZ1BQ9UIG0 1483 aaKnown RBP32.96■■■□□ 2.87
CCDC130-201ENST00000221554 HMGXB3Q12766 1538 aa32.95■■■□□ 2.86
CCDC130-201ENST00000221554 EHMT2Q96KQ7 1210 aa32.93■■■□□ 2.86
CCDC130-201ENST00000221554 WRNQ14191 1432 aaPredicted RBP eCLIP32.89■■■□□ 2.86
CCDC130-201ENST00000221554 TNIKQ9UKE5 1360 aa32.84■■■□□ 2.85
CCDC130-201ENST00000221554 SOGA1O94964 1423 aa32.83■■■□□ 2.85
CCDC130-201ENST00000221554 CSRNP3Q8WYN3 585 aa32.82■■■□□ 2.84
CCDC130-201ENST00000221554 PPARGC1BQ86YN6 1023 aaKnown RBP32.81■■■□□ 2.84
CCDC130-201ENST00000221554 CEP162Q5TB80 1403 aa32.69■■■□□ 2.82
CCDC130-201ENST00000221554 GOLGA3Q08378 1498 aa32.67■■■□□ 2.82
CCDC130-201ENST00000221554 SYNJ1O43426 1573 aa32.62■■■□□ 2.81
CCDC130-201ENST00000221554 RUSC2Q8N2Y8 1516 aa32.6■■■□□ 2.81
CCDC130-201ENST00000221554 CEP164Q9UPV0 1460 aa32.55■■■□□ 2.8
CCDC130-201ENST00000221554 KIF21BO75037 1637 aa32.54■■■□□ 2.8
CCDC130-201ENST00000221554 UBTFP17480 764 aaKnown RBP32.52■■■□□ 2.8
CCDC130-201ENST00000221554 TOP2BQ02880 1626 aa32.45■■■□□ 2.78
CCDC130-201ENST00000221554 BIVM-ERCC5R4GMW8 1640 aa32.37■■■□□ 2.77
CCDC130-201ENST00000221554 NESP48681 1621 aa32.25■■■□□ 2.75
CCDC130-201ENST00000221554 CFTRP13569 1480 aa32.2■■■□□ 2.75
CCDC130-201ENST00000221554 CLIP1P30622 1438 aa32.18■■■□□ 2.74
CCDC130-201ENST00000221554 ERICH3Q5RHP9 1530 aa32.12■■■□□ 2.73
CCDC130-201ENST00000221554 LAMC3Q9Y6N6 1575 aa32.12■■■□□ 2.73
CCDC130-201ENST00000221554 CADPSQ9ULU8 1353 aa32.1■■■□□ 2.73
CCDC130-201ENST00000221554 CCER1Q8TC90 406 aaPredicted RBP32.1■■■□□ 2.73
CCDC130-201ENST00000221554 RAPGEF2Q9Y4G8 1499 aa32.1■■■□□ 2.73
CCDC130-201ENST00000221554 VPS8Q8N3P4 1428 aa32.08■■■□□ 2.73
CCDC130-201ENST00000221554 PRDM2Q13029 1718 aa32.05■■■□□ 2.72
CCDC130-201ENST00000221554 CUX1P39880 1505 aa32.05■■■□□ 2.72
CCDC130-201ENST00000221554 PRXQ9BXM0 1461 aa32.03■■■□□ 2.72
CCDC130-201ENST00000221554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32■■■□□ 2.71
CCDC130-201ENST00000221554 KIF27Q86VH2 1401 aa31.99■■■□□ 2.71
CCDC130-201ENST00000221554 KIF21AQ7Z4S6 1674 aa31.94■■■□□ 2.7
CCDC130-201ENST00000221554 APLP2Q06481 763 aa31.93■■■□□ 2.7
CCDC130-201ENST00000221554 TTBK1Q5TCY1 1321 aaPredicted RBP31.86■■■□□ 2.69
CCDC130-201ENST00000221554 PDS5BQ9NTI5 1447 aa31.82■■■□□ 2.68
CCDC130-201ENST00000221554 ERCC6Q03468 1493 aa31.8■■■□□ 2.68
CCDC130-201ENST00000221554 FANCD2Q9BXW9 1451 aa31.78■■■□□ 2.68
CCDC130-201ENST00000221554 ARAP1Q96P48 1450 aa31.65■■■□□ 2.66
CCDC130-201ENST00000221554 THOC2Q8NI27 1593 aaKnown RBP31.62■■■□□ 2.65
CCDC130-201ENST00000221554 CUX2O14529 1486 aa31.57■■■□□ 2.64
CCDC130-201ENST00000221554 IGF1RP08069 1367 aa31.55■■■□□ 2.64
CCDC130-201ENST00000221554 RANGAP1P46060 587 aaPredicted RBP31.54■■■□□ 2.64
CCDC130-201ENST00000221554 FGD5Q6ZNL6 1462 aa31.52■■■□□ 2.64
CCDC130-201ENST00000221554 MRC2Q9UBG0 1479 aa31.51■■■□□ 2.63
CCDC130-201ENST00000221554 URB2Q14146 1524 aaKnown RBP31.49■■■□□ 2.63
CCDC130-201ENST00000221554 HNRNPUL2Q1KMD3 747 aaKnown RBP31.48■■■□□ 2.63
CCDC130-201ENST00000221554 ARHGAP35Q9NRY4 1499 aa31.44■■■□□ 2.62
CCDC130-201ENST00000221554 CARMIL1Q5VZK9 1371 aa31.44■■■□□ 2.62
CCDC130-201ENST00000221554 WDR62O43379 1518 aa31.43■■■□□ 2.62
CCDC130-201ENST00000221554 DNMBPQ6XZF7 1577 aa31.42■■■□□ 2.62
CCDC130-201ENST00000221554 MAP3K1Q13233 1512 aa31.35■■■□□ 2.61
CCDC130-201ENST00000221554 TOPBP1Q92547 1522 aa31.35■■■□□ 2.61
CCDC130-201ENST00000221554 CLSPNQ9HAW4 1339 aa31.35■■■□□ 2.61
CCDC130-201ENST00000221554 DIEXFQ68CQ4 756 aaKnown RBP31.33■■■□□ 2.61
CCDC130-201ENST00000221554 RRBP1Q9P2E9 1410 aaKnown RBP31.33■■■□□ 2.61
CCDC130-201ENST00000221554 ABCA10Q8WWZ4 1543 aa31.31■■■□□ 2.6
CCDC130-201ENST00000221554 ZNF316A6NFI3 1004 aaPredicted RBP31.28■■■□□ 2.6
CCDC130-201ENST00000221554 KANK4Q5T7N3 995 aaPredicted RBP31.27■■■□□ 2.6
CCDC130-201ENST00000221554 FHAD1B1AJZ9 1412 aa31.2■■■□□ 2.59
CCDC130-201ENST00000221554 POLA1P09884 1462 aaPredicted RBP31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms