Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTNAP3BQ96NU0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CNTNAP3BQ96NU0 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTNAP3BQ96NU0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CNTNAP3BQ96NU0 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CNTNAP3BQ96NU0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 PRKY-204ENST00000533551 1019 ntBASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTNAP3BQ96NU0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 AP003097.1-201ENST00000530657 1135 ntBASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CNTNAP3BQ96NU0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CNTNAP3BQ96NU0 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 BX276092.2-201ENST00000417668 665 ntBASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.68■□□□□ 0.9
CNTNAP3BQ96NU0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 AC097639.1-201ENST00000565519 1891 ntBASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 CYP2T1P-201ENST00000432607 1285 ntBASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 C2orf69P4-201ENST00000565394 541 ntBASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 AC010536.3-201ENST00000620306 533 ntBASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTNAP3BQ96NU0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CNTNAP3BQ96NU0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms