Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DRB4X5D2U9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DRB4X5D2U9 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.3■□□□□ 0.84
HLA-DRB4X5D2U9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DRB4X5D2U9 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DRB4X5D2U9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DRB4X5D2U9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DRB4X5D2U9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC20.27■□□□□ 0.84
HLA-DRB4X5D2U9 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC20.26■□□□□ 0.83
HLA-DRB4X5D2U9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DRB4X5D2U9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DRB4X5D2U9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DRB4X5D2U9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DRB4X5D2U9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DRB4X5D2U9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DRB4X5D2U9 RARRES2P7-201ENST00000567349 469 ntBASIC20.22■□□□□ 0.83
HLA-DRB4X5D2U9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HLA-DRB4X5D2U9 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC20.21■□□□□ 0.83
HLA-DRB4X5D2U9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DRB4X5D2U9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DRB4X5D2U9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DRB4X5D2U9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DRB4X5D2U9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DRB4X5D2U9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.18■□□□□ 0.82
HLA-DRB4X5D2U9 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DRB4X5D2U9 AL133380.1-201ENST00000506013 324 ntBASIC20.15■□□□□ 0.82
HLA-DRB4X5D2U9 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DRB4X5D2U9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
HLA-DRB4X5D2U9 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC20.14■□□□□ 0.81
HLA-DRB4X5D2U9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DRB4X5D2U9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DRB4X5D2U9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DRB4X5D2U9 SETD8P1-201ENST00000623146 1180 ntBASIC20.13■□□□□ 0.81
HLA-DRB4X5D2U9 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DRB4X5D2U9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DRB4X5D2U9 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DRB4X5D2U9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DRB4X5D2U9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DRB4X5D2U9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DRB4X5D2U9 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DRB4X5D2U9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
HLA-DRB4X5D2U9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HLA-DRB4X5D2U9 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HLA-DRB4X5D2U9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HLA-DRB4X5D2U9 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DRB4X5D2U9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DRB4X5D2U9 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DRB4X5D2U9 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DRB4X5D2U9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DRB4X5D2U9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
HLA-DRB4X5D2U9 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DRB4X5D2U9 WASH5P-204ENST00000632292 975 ntBASIC20.03■□□□□ 0.8
HLA-DRB4X5D2U9 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DRB4X5D2U9 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DRB4X5D2U9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DRB4X5D2U9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DRB4X5D2U9 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DRB4X5D2U9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DRB4X5D2U9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20■□□□□ 0.79
HLA-DRB4X5D2U9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DRB4X5D2U9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DRB4X5D2U9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DRB4X5D2U9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DRB4X5D2U9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
HLA-DRB4X5D2U9 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DRB4X5D2U9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC19.99■□□□□ 0.79
HLA-DRB4X5D2U9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC19.98■□□□□ 0.79
HLA-DRB4X5D2U9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DRB4X5D2U9 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HLA-DRB4X5D2U9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
HLA-DRB4X5D2U9 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DRB4X5D2U9 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC19.96■□□□□ 0.79
HLA-DRB4X5D2U9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DRB4X5D2U9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DRB4X5D2U9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DRB4X5D2U9 AC097358.2-201ENST00000607541 1159 ntBASIC19.95■□□□□ 0.78
HLA-DRB4X5D2U9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DRB4X5D2U9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DRB4X5D2U9 AC136428.2-201ENST00000563187 214 ntBASIC19.93■□□□□ 0.78
HLA-DRB4X5D2U9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DRB4X5D2U9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DRB4X5D2U9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DRB4X5D2U9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DRB4X5D2U9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DRB4X5D2U9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DRB4X5D2U9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
HLA-DRB4X5D2U9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DRB4X5D2U9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
HLA-DRB4X5D2U9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DRB4X5D2U9 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
HLA-DRB4X5D2U9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC19.89■□□□□ 0.77
HLA-DRB4X5D2U9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DRB4X5D2U9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DRB4X5D2U9 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DRB4X5D2U9 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DRB4X5D2U9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.88■□□□□ 0.77
HLA-DRB4X5D2U9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.88■□□□□ 0.77
HLA-DRB4X5D2U9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DRB4X5D2U9 AL391121.1-201ENST00000607967 1349 ntBASIC19.87■□□□□ 0.77
HLA-DRB4X5D2U9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms