Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
PCDHGA3Q9Y5H0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHGA3Q9Y5H0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHGA3Q9Y5H0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.27■■□□□ 1.8
PCDHGA3Q9Y5H0 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHGA3Q9Y5H0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHGA3Q9Y5H0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHGA3Q9Y5H0 MIR762-201ENST00000390236 83 ntBASIC26.24■■□□□ 1.79
PCDHGA3Q9Y5H0 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHGA3Q9Y5H0 AC087741.3-201ENST00000624270 1347 ntBASIC26.23■■□□□ 1.79
PCDHGA3Q9Y5H0 DUX4L28-201ENST00000623687 678 ntBASIC26.23■■□□□ 1.79
PCDHGA3Q9Y5H0 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHGA3Q9Y5H0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHGA3Q9Y5H0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
PCDHGA3Q9Y5H0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
PCDHGA3Q9Y5H0 AC005559.1-201ENST00000589661 871 ntBASIC26.17■■□□□ 1.78
PCDHGA3Q9Y5H0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.17■■□□□ 1.78
PCDHGA3Q9Y5H0 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.16■■□□□ 1.78
PCDHGA3Q9Y5H0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.15■■□□□ 1.78
PCDHGA3Q9Y5H0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.15■■□□□ 1.78
PCDHGA3Q9Y5H0 AC044849.2-201ENST00000606596 710 ntBASIC26.14■■□□□ 1.78
PCDHGA3Q9Y5H0 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.14■■□□□ 1.77
PCDHGA3Q9Y5H0 ABHD17AP4-201ENST00000411545 909 ntBASIC26.13■■□□□ 1.77
PCDHGA3Q9Y5H0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHGA3Q9Y5H0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.12■■□□□ 1.77
PCDHGA3Q9Y5H0 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHGA3Q9Y5H0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.11■■□□□ 1.77
PCDHGA3Q9Y5H0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.11■■□□□ 1.77
PCDHGA3Q9Y5H0 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHGA3Q9Y5H0 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.1■■□□□ 1.77
PCDHGA3Q9Y5H0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHGA3Q9Y5H0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHGA3Q9Y5H0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.1■■□□□ 1.77
PCDHGA3Q9Y5H0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.09■■□□□ 1.77
PCDHGA3Q9Y5H0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHGA3Q9Y5H0 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHGA3Q9Y5H0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHGA3Q9Y5H0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHGA3Q9Y5H0 WASH5P-204ENST00000632292 975 ntBASIC26.07■■□□□ 1.76
PCDHGA3Q9Y5H0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHGA3Q9Y5H0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
PCDHGA3Q9Y5H0 MIR7108-201ENST00000614319 87 ntBASIC26.05■■□□□ 1.76
PCDHGA3Q9Y5H0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHGA3Q9Y5H0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
PCDHGA3Q9Y5H0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
PCDHGA3Q9Y5H0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
PCDHGA3Q9Y5H0 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHGA3Q9Y5H0 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHGA3Q9Y5H0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHGA3Q9Y5H0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHGA3Q9Y5H0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHGA3Q9Y5H0 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHGA3Q9Y5H0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHGA3Q9Y5H0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHGA3Q9Y5H0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHGA3Q9Y5H0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHGA3Q9Y5H0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.94■■□□□ 1.74
PCDHGA3Q9Y5H0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.93■■□□□ 1.74
PCDHGA3Q9Y5H0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.93■■□□□ 1.74
PCDHGA3Q9Y5H0 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHGA3Q9Y5H0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.92■■□□□ 1.74
PCDHGA3Q9Y5H0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
PCDHGA3Q9Y5H0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHGA3Q9Y5H0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHGA3Q9Y5H0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHGA3Q9Y5H0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.91■■□□□ 1.74
PCDHGA3Q9Y5H0 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
PCDHGA3Q9Y5H0 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHGA3Q9Y5H0 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHGA3Q9Y5H0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.88■■□□□ 1.73
PCDHGA3Q9Y5H0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHGA3Q9Y5H0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.87■■□□□ 1.73
PCDHGA3Q9Y5H0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.87■■□□□ 1.73
PCDHGA3Q9Y5H0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
PCDHGA3Q9Y5H0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PCDHGA3Q9Y5H0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.86■■□□□ 1.73
PCDHGA3Q9Y5H0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA3Q9Y5H0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA3Q9Y5H0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA3Q9Y5H0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.85■■□□□ 1.73
PCDHGA3Q9Y5H0 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA3Q9Y5H0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHGA3Q9Y5H0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.84■■□□□ 1.73
PCDHGA3Q9Y5H0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHGA3Q9Y5H0 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHGA3Q9Y5H0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHGA3Q9Y5H0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.83■■□□□ 1.73
PCDHGA3Q9Y5H0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.82■■□□□ 1.72
PCDHGA3Q9Y5H0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHGA3Q9Y5H0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHGA3Q9Y5H0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
PCDHGA3Q9Y5H0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHGA3Q9Y5H0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHGA3Q9Y5H0 ZNRF2P2-203ENST00000454624 420 ntBASIC25.8■■□□□ 1.72
PCDHGA3Q9Y5H0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHGA3Q9Y5H0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHGA3Q9Y5H0 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC25.79■■□□□ 1.72
PCDHGA3Q9Y5H0 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHGA3Q9Y5H0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHGA3Q9Y5H0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms