Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.23■■□□□ 1.95
TM9SF3Q9HD45 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.23■■□□□ 1.95
TM9SF3Q9HD45 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
TM9SF3Q9HD45 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
TM9SF3Q9HD45 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
TM9SF3Q9HD45 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
TM9SF3Q9HD45 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC27.21■■□□□ 1.95
TM9SF3Q9HD45 MLEC-202ENST00000412616 841 ntTSL 3 BASIC27.21■■□□□ 1.95
TM9SF3Q9HD45 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
TM9SF3Q9HD45 MIR7108-201ENST00000614319 87 ntBASIC27.2■■□□□ 1.94
TM9SF3Q9HD45 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
TM9SF3Q9HD45 WASH5P-204ENST00000632292 975 ntBASIC27.19■■□□□ 1.94
TM9SF3Q9HD45 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
TM9SF3Q9HD45 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
TM9SF3Q9HD45 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
TM9SF3Q9HD45 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC27.15■■□□□ 1.94
TM9SF3Q9HD45 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC27.15■■□□□ 1.94
TM9SF3Q9HD45 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
TM9SF3Q9HD45 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
TM9SF3Q9HD45 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
TM9SF3Q9HD45 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
TM9SF3Q9HD45 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
TM9SF3Q9HD45 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.08■■□□□ 1.93
TM9SF3Q9HD45 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
TM9SF3Q9HD45 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
TM9SF3Q9HD45 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
TM9SF3Q9HD45 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
TM9SF3Q9HD45 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.07■■□□□ 1.92
TM9SF3Q9HD45 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.06■■□□□ 1.92
TM9SF3Q9HD45 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
TM9SF3Q9HD45 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.06■■□□□ 1.92
TM9SF3Q9HD45 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
TM9SF3Q9HD45 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
TM9SF3Q9HD45 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
TM9SF3Q9HD45 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
TM9SF3Q9HD45 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.03■■□□□ 1.92
TM9SF3Q9HD45 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.03■■□□□ 1.92
TM9SF3Q9HD45 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.02■■□□□ 1.92
TM9SF3Q9HD45 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
TM9SF3Q9HD45 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
TM9SF3Q9HD45 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27■■□□□ 1.91
TM9SF3Q9HD45 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27■■□□□ 1.91
TM9SF3Q9HD45 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
TM9SF3Q9HD45 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
TM9SF3Q9HD45 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.99■■□□□ 1.91
TM9SF3Q9HD45 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.99■■□□□ 1.91
TM9SF3Q9HD45 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
TM9SF3Q9HD45 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
TM9SF3Q9HD45 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
TM9SF3Q9HD45 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.97■■□□□ 1.91
TM9SF3Q9HD45 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.97■■□□□ 1.91
TM9SF3Q9HD45 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TM9SF3Q9HD45 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
TM9SF3Q9HD45 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
TM9SF3Q9HD45 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
TM9SF3Q9HD45 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.94■■□□□ 1.9
TM9SF3Q9HD45 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
TM9SF3Q9HD45 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
TM9SF3Q9HD45 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
TM9SF3Q9HD45 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
TM9SF3Q9HD45 ZNRF2P2-203ENST00000454624 420 ntBASIC26.93■■□□□ 1.9
TM9SF3Q9HD45 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.93■■□□□ 1.9
TM9SF3Q9HD45 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
TM9SF3Q9HD45 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
TM9SF3Q9HD45 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
TM9SF3Q9HD45 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
TM9SF3Q9HD45 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TM9SF3Q9HD45 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 HLA-V-202ENST00000446817 847 ntBASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
TM9SF3Q9HD45 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.89■■□□□ 1.9
TM9SF3Q9HD45 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
TM9SF3Q9HD45 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.88■■□□□ 1.89
TM9SF3Q9HD45 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.88■■□□□ 1.89
TM9SF3Q9HD45 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
TM9SF3Q9HD45 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.87■■□□□ 1.89
TM9SF3Q9HD45 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
TM9SF3Q9HD45 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
TM9SF3Q9HD45 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.86■■□□□ 1.89
TM9SF3Q9HD45 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
TM9SF3Q9HD45 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
TM9SF3Q9HD45 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.84■■□□□ 1.89
TM9SF3Q9HD45 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
TM9SF3Q9HD45 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TM9SF3Q9HD45 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
TM9SF3Q9HD45 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.82■■□□□ 1.88
TM9SF3Q9HD45 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
TM9SF3Q9HD45 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.8■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms