Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SPG11Q96JI7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SPG11Q96JI7 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
SPG11Q96JI7 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.58■■□□□ 1.36
SPG11Q96JI7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
SPG11Q96JI7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.55■■□□□ 1.36
SPG11Q96JI7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SPG11Q96JI7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SPG11Q96JI7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SPG11Q96JI7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SPG11Q96JI7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SPG11Q96JI7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SPG11Q96JI7 MIR639-201ENST00000384974 98 ntBASIC23.53■■□□□ 1.36
SPG11Q96JI7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.53■■□□□ 1.36
SPG11Q96JI7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
SPG11Q96JI7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SPG11Q96JI7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SPG11Q96JI7 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SPG11Q96JI7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.5■■□□□ 1.35
SPG11Q96JI7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
SPG11Q96JI7 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SPG11Q96JI7 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SPG11Q96JI7 HSD17B1P1-201ENST00000590052 955 ntBASIC23.48■■□□□ 1.35
SPG11Q96JI7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SPG11Q96JI7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.48■■□□□ 1.35
SPG11Q96JI7 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.47■■□□□ 1.35
SPG11Q96JI7 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.46■■□□□ 1.35
SPG11Q96JI7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
SPG11Q96JI7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.45■■□□□ 1.35
SPG11Q96JI7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.45■■□□□ 1.35
SPG11Q96JI7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.44■■□□□ 1.34
SPG11Q96JI7 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.44■■□□□ 1.34
SPG11Q96JI7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
SPG11Q96JI7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
SPG11Q96JI7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.43■■□□□ 1.34
SPG11Q96JI7 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
SPG11Q96JI7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SPG11Q96JI7 MIR3648-2-201ENST00000581792 180 ntBASIC23.43■■□□□ 1.34
SPG11Q96JI7 MIR3648-1-201ENST00000615959 180 ntBASIC23.43■■□□□ 1.34
SPG11Q96JI7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.42■■□□□ 1.34
SPG11Q96JI7 DUX4L29-201ENST00000425409 679 ntBASIC23.42■■□□□ 1.34
SPG11Q96JI7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
SPG11Q96JI7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
SPG11Q96JI7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
SPG11Q96JI7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
SPG11Q96JI7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.39■■□□□ 1.33
SPG11Q96JI7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
SPG11Q96JI7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.38■■□□□ 1.33
SPG11Q96JI7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.37■■□□□ 1.33
SPG11Q96JI7 AC021231.2-201ENST00000594613 730 ntBASIC23.37■■□□□ 1.33
SPG11Q96JI7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SPG11Q96JI7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
SPG11Q96JI7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SPG11Q96JI7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.34■■□□□ 1.33
SPG11Q96JI7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SPG11Q96JI7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SPG11Q96JI7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.33■■□□□ 1.33
SPG11Q96JI7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SPG11Q96JI7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SPG11Q96JI7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
SPG11Q96JI7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SPG11Q96JI7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SPG11Q96JI7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SPG11Q96JI7 AC016575.1-201ENST00000607026 382 ntBASIC23.3■■□□□ 1.32
SPG11Q96JI7 CR559946.2-201ENST00000623684 991 ntBASIC23.29■■□□□ 1.32
SPG11Q96JI7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.29■■□□□ 1.32
SPG11Q96JI7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SPG11Q96JI7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SPG11Q96JI7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SPG11Q96JI7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.31
SPG11Q96JI7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.31
SPG11Q96JI7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SPG11Q96JI7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.25■■□□□ 1.31
SPG11Q96JI7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SPG11Q96JI7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SPG11Q96JI7 WASH5P-204ENST00000632292 975 ntBASIC23.23■■□□□ 1.31
SPG11Q96JI7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SPG11Q96JI7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.22■■□□□ 1.31
SPG11Q96JI7 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SPG11Q96JI7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.21■■□□□ 1.31
SPG11Q96JI7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SPG11Q96JI7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SPG11Q96JI7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SPG11Q96JI7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
SPG11Q96JI7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SPG11Q96JI7 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SPG11Q96JI7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
SPG11Q96JI7 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC23.2■■□□□ 1.3
SPG11Q96JI7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SPG11Q96JI7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SPG11Q96JI7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.19■■□□□ 1.3
SPG11Q96JI7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.19■■□□□ 1.3
SPG11Q96JI7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SPG11Q96JI7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.18■■□□□ 1.3
SPG11Q96JI7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.18■■□□□ 1.3
SPG11Q96JI7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.18■■□□□ 1.3
SPG11Q96JI7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SPG11Q96JI7 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SPG11Q96JI7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SPG11Q96JI7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms