Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.71■■□□□ 1.87
PDLIM5Q96HC4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
PDLIM5Q96HC4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.7■■□□□ 1.87
PDLIM5Q96HC4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.7■■□□□ 1.86
PDLIM5Q96HC4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.69■■□□□ 1.86
PDLIM5Q96HC4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.67■■□□□ 1.86
PDLIM5Q96HC4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.66■■□□□ 1.86
PDLIM5Q96HC4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PDLIM5Q96HC4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
PDLIM5Q96HC4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PDLIM5Q96HC4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PDLIM5Q96HC4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PDLIM5Q96HC4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
PDLIM5Q96HC4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.59■■□□□ 1.85
PDLIM5Q96HC4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
PDLIM5Q96HC4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.59■■□□□ 1.85
PDLIM5Q96HC4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PDLIM5Q96HC4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.59■■□□□ 1.85
PDLIM5Q96HC4 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.58■■□□□ 1.85
PDLIM5Q96HC4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
PDLIM5Q96HC4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PDLIM5Q96HC4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.56■■□□□ 1.84
PDLIM5Q96HC4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
PDLIM5Q96HC4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
PDLIM5Q96HC4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
PDLIM5Q96HC4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.55■■□□□ 1.84
PDLIM5Q96HC4 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
PDLIM5Q96HC4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PDLIM5Q96HC4 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.52■■□□□ 1.84
PDLIM5Q96HC4 AL133380.1-201ENST00000506013 324 ntBASIC26.52■■□□□ 1.84
PDLIM5Q96HC4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.52■■□□□ 1.84
PDLIM5Q96HC4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
PDLIM5Q96HC4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PDLIM5Q96HC4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.49■■□□□ 1.83
PDLIM5Q96HC4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.46■■□□□ 1.83
PDLIM5Q96HC4 WASH5P-204ENST00000632292 975 ntBASIC26.46■■□□□ 1.83
PDLIM5Q96HC4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
PDLIM5Q96HC4 AL161658.1-201ENST00000623641 1967 ntBASIC26.44■■□□□ 1.82
PDLIM5Q96HC4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
PDLIM5Q96HC4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PDLIM5Q96HC4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.43■■□□□ 1.82
PDLIM5Q96HC4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PDLIM5Q96HC4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PDLIM5Q96HC4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PDLIM5Q96HC4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
PDLIM5Q96HC4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.4■■□□□ 1.82
PDLIM5Q96HC4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PDLIM5Q96HC4 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PDLIM5Q96HC4 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
PDLIM5Q96HC4 RARRES2P7-201ENST00000567349 469 ntBASIC26.39■■□□□ 1.82
PDLIM5Q96HC4 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PDLIM5Q96HC4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.38■■□□□ 1.81
PDLIM5Q96HC4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PDLIM5Q96HC4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
PDLIM5Q96HC4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
PDLIM5Q96HC4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PDLIM5Q96HC4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PDLIM5Q96HC4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PDLIM5Q96HC4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.34■■□□□ 1.81
PDLIM5Q96HC4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PDLIM5Q96HC4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.8
PDLIM5Q96HC4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 SETD8P1-201ENST00000623146 1180 ntBASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PDLIM5Q96HC4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PDLIM5Q96HC4 ABCB10P1-201ENST00000614297 2181 ntBASIC26.31■■□□□ 1.8
PDLIM5Q96HC4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PDLIM5Q96HC4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
PDLIM5Q96HC4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
PDLIM5Q96HC4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
PDLIM5Q96HC4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PDLIM5Q96HC4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PDLIM5Q96HC4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PDLIM5Q96HC4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PDLIM5Q96HC4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PDLIM5Q96HC4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PDLIM5Q96HC4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PDLIM5Q96HC4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PDLIM5Q96HC4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.24■■□□□ 1.79
PDLIM5Q96HC4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PDLIM5Q96HC4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
PDLIM5Q96HC4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PDLIM5Q96HC4 ST7-AS1-201ENST00000456775 1889 ntBASIC26.22■■□□□ 1.79
PDLIM5Q96HC4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.22■■□□□ 1.79
PDLIM5Q96HC4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PDLIM5Q96HC4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.21■■□□□ 1.79
PDLIM5Q96HC4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PDLIM5Q96HC4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PDLIM5Q96HC4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PDLIM5Q96HC4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
PDLIM5Q96HC4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.19■■□□□ 1.78
PDLIM5Q96HC4 AL135925.1-201ENST00000605920 1701 ntBASIC26.19■■□□□ 1.78
PDLIM5Q96HC4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.18■■□□□ 1.78
PDLIM5Q96HC4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms