Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
VRK3Q8IV63 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC26.67■■□□□ 1.86
VRK3Q8IV63 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.65■■□□□ 1.86
VRK3Q8IV63 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
VRK3Q8IV63 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
VRK3Q8IV63 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
VRK3Q8IV63 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.65■■□□□ 1.86
VRK3Q8IV63 AC097358.2-201ENST00000607541 1159 ntBASIC26.65■■□□□ 1.86
VRK3Q8IV63 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
VRK3Q8IV63 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
VRK3Q8IV63 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.63■■□□□ 1.85
VRK3Q8IV63 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
VRK3Q8IV63 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.63■■□□□ 1.85
VRK3Q8IV63 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
VRK3Q8IV63 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
VRK3Q8IV63 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC26.62■■□□□ 1.85
VRK3Q8IV63 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
VRK3Q8IV63 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
VRK3Q8IV63 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.6■■□□□ 1.85
VRK3Q8IV63 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
VRK3Q8IV63 WASH5P-204ENST00000632292 975 ntBASIC26.59■■□□□ 1.85
VRK3Q8IV63 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
VRK3Q8IV63 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
VRK3Q8IV63 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
VRK3Q8IV63 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
VRK3Q8IV63 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC26.57■■□□□ 1.84
VRK3Q8IV63 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.56■■□□□ 1.84
VRK3Q8IV63 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
VRK3Q8IV63 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
VRK3Q8IV63 CAHM-201ENST00000604200 896 ntBASIC26.55■■□□□ 1.84
VRK3Q8IV63 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
VRK3Q8IV63 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
VRK3Q8IV63 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
VRK3Q8IV63 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
VRK3Q8IV63 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.51■■□□□ 1.83
VRK3Q8IV63 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.51■■□□□ 1.83
VRK3Q8IV63 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
VRK3Q8IV63 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.49■■□□□ 1.83
VRK3Q8IV63 AL391121.1-201ENST00000607967 1349 ntBASIC26.49■■□□□ 1.83
VRK3Q8IV63 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VRK3Q8IV63 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
VRK3Q8IV63 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VRK3Q8IV63 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VRK3Q8IV63 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.45■■□□□ 1.82
VRK3Q8IV63 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.45■■□□□ 1.82
VRK3Q8IV63 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
VRK3Q8IV63 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.45■■□□□ 1.82
VRK3Q8IV63 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VRK3Q8IV63 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.44■■□□□ 1.82
VRK3Q8IV63 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
VRK3Q8IV63 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
VRK3Q8IV63 AL161658.1-201ENST00000623641 1967 ntBASIC26.43■■□□□ 1.82
VRK3Q8IV63 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
VRK3Q8IV63 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
VRK3Q8IV63 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.42■■□□□ 1.82
VRK3Q8IV63 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
VRK3Q8IV63 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
VRK3Q8IV63 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
VRK3Q8IV63 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
VRK3Q8IV63 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.4■■□□□ 1.82
VRK3Q8IV63 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
VRK3Q8IV63 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
VRK3Q8IV63 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
VRK3Q8IV63 SUZ12P1-203ENST00000578195 985 ntBASIC26.39■■□□□ 1.82
VRK3Q8IV63 EBPL-202ENST00000378268 680 ntTSL 3 BASIC26.38■■□□□ 1.81
VRK3Q8IV63 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
VRK3Q8IV63 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC26.37■■□□□ 1.81
VRK3Q8IV63 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
VRK3Q8IV63 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
VRK3Q8IV63 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
VRK3Q8IV63 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
VRK3Q8IV63 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
VRK3Q8IV63 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
VRK3Q8IV63 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VRK3Q8IV63 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
VRK3Q8IV63 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VRK3Q8IV63 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.31■■□□□ 1.8
VRK3Q8IV63 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
VRK3Q8IV63 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.31■■□□□ 1.8
VRK3Q8IV63 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VRK3Q8IV63 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VRK3Q8IV63 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
VRK3Q8IV63 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.29■■□□□ 1.8
VRK3Q8IV63 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VRK3Q8IV63 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VRK3Q8IV63 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.27■■□□□ 1.8
VRK3Q8IV63 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VRK3Q8IV63 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
VRK3Q8IV63 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VRK3Q8IV63 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VRK3Q8IV63 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VRK3Q8IV63 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VRK3Q8IV63 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.23■■□□□ 1.79
VRK3Q8IV63 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.23■■□□□ 1.79
VRK3Q8IV63 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.23■■□□□ 1.79
VRK3Q8IV63 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.23■■□□□ 1.79
VRK3Q8IV63 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
VRK3Q8IV63 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
VRK3Q8IV63 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
VRK3Q8IV63 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms