Protein–RNA interactions for Protein: P68431

HIST1H3A, Histone H3.1, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H3AP68431 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HIST1H3AP68431 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HIST1H3AP68431 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.8■■□□□ 1.4
HIST1H3AP68431 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HIST1H3AP68431 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HIST1H3AP68431 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC23.77■■□□□ 1.4
HIST1H3AP68431 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HIST1H3AP68431 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.75■■□□□ 1.39
HIST1H3AP68431 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.75■■□□□ 1.39
HIST1H3AP68431 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.73■■□□□ 1.39
HIST1H3AP68431 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HIST1H3AP68431 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.72■■□□□ 1.39
HIST1H3AP68431 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HIST1H3AP68431 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HIST1H3AP68431 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.71■■□□□ 1.39
HIST1H3AP68431 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.7■■□□□ 1.39
HIST1H3AP68431 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
HIST1H3AP68431 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
HIST1H3AP68431 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HIST1H3AP68431 AL133380.1-201ENST00000506013 324 ntBASIC23.68■■□□□ 1.38
HIST1H3AP68431 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.67■■□□□ 1.38
HIST1H3AP68431 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HIST1H3AP68431 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.67■■□□□ 1.38
HIST1H3AP68431 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.67■■□□□ 1.38
HIST1H3AP68431 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HIST1H3AP68431 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
HIST1H3AP68431 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.65■■□□□ 1.38
HIST1H3AP68431 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HIST1H3AP68431 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HIST1H3AP68431 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
HIST1H3AP68431 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HIST1H3AP68431 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
HIST1H3AP68431 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HIST1H3AP68431 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.61■■□□□ 1.37
HIST1H3AP68431 WASH5P-204ENST00000632292 975 ntBASIC23.6■■□□□ 1.37
HIST1H3AP68431 RARRES2P7-201ENST00000567349 469 ntBASIC23.58■■□□□ 1.37
HIST1H3AP68431 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HIST1H3AP68431 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.56■■□□□ 1.36
HIST1H3AP68431 AL161658.1-201ENST00000623641 1967 ntBASIC23.56■■□□□ 1.36
HIST1H3AP68431 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.56■■□□□ 1.36
HIST1H3AP68431 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HIST1H3AP68431 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HIST1H3AP68431 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
HIST1H3AP68431 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HIST1H3AP68431 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.54■■□□□ 1.36
HIST1H3AP68431 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HIST1H3AP68431 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HIST1H3AP68431 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HIST1H3AP68431 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HIST1H3AP68431 SETD8P1-201ENST00000623146 1180 ntBASIC23.52■■□□□ 1.36
HIST1H3AP68431 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIST1H3AP68431 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIST1H3AP68431 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIST1H3AP68431 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HIST1H3AP68431 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HIST1H3AP68431 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
HIST1H3AP68431 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
HIST1H3AP68431 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HIST1H3AP68431 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
HIST1H3AP68431 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HIST1H3AP68431 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
HIST1H3AP68431 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
HIST1H3AP68431 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
HIST1H3AP68431 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
HIST1H3AP68431 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC23.47■■□□□ 1.35
HIST1H3AP68431 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HIST1H3AP68431 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HIST1H3AP68431 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HIST1H3AP68431 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HIST1H3AP68431 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
HIST1H3AP68431 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HIST1H3AP68431 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
HIST1H3AP68431 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.42■■□□□ 1.34
HIST1H3AP68431 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
HIST1H3AP68431 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HIST1H3AP68431 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
HIST1H3AP68431 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HIST1H3AP68431 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HIST1H3AP68431 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.4■■□□□ 1.34
HIST1H3AP68431 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HIST1H3AP68431 ABCB10P1-201ENST00000614297 2181 ntBASIC23.4■■□□□ 1.34
HIST1H3AP68431 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
HIST1H3AP68431 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
HIST1H3AP68431 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
HIST1H3AP68431 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HIST1H3AP68431 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HIST1H3AP68431 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC23.37■■□□□ 1.33
HIST1H3AP68431 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
HIST1H3AP68431 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC23.36■■□□□ 1.33
HIST1H3AP68431 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HIST1H3AP68431 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC23.35■■□□□ 1.33
HIST1H3AP68431 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC23.35■■□□□ 1.33
HIST1H3AP68431 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HIST1H3AP68431 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.34■■□□□ 1.33
HIST1H3AP68431 AC136428.2-201ENST00000563187 214 ntBASIC23.34■■□□□ 1.33
HIST1H3AP68431 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HIST1H3AP68431 ST7-AS1-201ENST00000456775 1889 ntBASIC23.34■■□□□ 1.33
HIST1H3AP68431 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HIST1H3AP68431 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC23.33■■□□□ 1.32
HIST1H3AP68431 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms