Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.19■■□□□ 1.46
CLRN1P58418 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CLRN1P58418 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CLRN1P58418 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC24.16■■□□□ 1.46
CLRN1P58418 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
CLRN1P58418 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CLRN1P58418 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
CLRN1P58418 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
CLRN1P58418 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CLRN1P58418 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CLRN1P58418 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
CLRN1P58418 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CLRN1P58418 RARRES2P7-201ENST00000567349 469 ntBASIC24.11■■□□□ 1.45
CLRN1P58418 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CLRN1P58418 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CLRN1P58418 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC24.1■■□□□ 1.45
CLRN1P58418 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.09■■□□□ 1.45
CLRN1P58418 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CLRN1P58418 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CLRN1P58418 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.08■■□□□ 1.45
CLRN1P58418 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
CLRN1P58418 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.07■■□□□ 1.44
CLRN1P58418 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CLRN1P58418 AL133380.1-201ENST00000506013 324 ntBASIC24.04■■□□□ 1.44
CLRN1P58418 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CLRN1P58418 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
CLRN1P58418 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CLRN1P58418 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC24.01■■□□□ 1.43
CLRN1P58418 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.01■■□□□ 1.43
CLRN1P58418 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
CLRN1P58418 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CLRN1P58418 SETD8P1-201ENST00000623146 1180 ntBASIC23.99■■□□□ 1.43
CLRN1P58418 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CLRN1P58418 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CLRN1P58418 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CLRN1P58418 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CLRN1P58418 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.98■■□□□ 1.43
CLRN1P58418 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
CLRN1P58418 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.97■■□□□ 1.43
CLRN1P58418 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CLRN1P58418 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CLRN1P58418 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CLRN1P58418 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
CLRN1P58418 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CLRN1P58418 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CLRN1P58418 WASH5P-204ENST00000632292 975 ntBASIC23.94■■□□□ 1.42
CLRN1P58418 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
CLRN1P58418 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CLRN1P58418 AL161658.1-201ENST00000623641 1967 ntBASIC23.92■■□□□ 1.42
CLRN1P58418 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
CLRN1P58418 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CLRN1P58418 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.91■■□□□ 1.42
CLRN1P58418 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CLRN1P58418 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.9■■□□□ 1.42
CLRN1P58418 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CLRN1P58418 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
CLRN1P58418 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.89■■□□□ 1.42
CLRN1P58418 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CLRN1P58418 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CLRN1P58418 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CLRN1P58418 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CLRN1P58418 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.87■■□□□ 1.41
CLRN1P58418 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CLRN1P58418 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLRN1P58418 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.85■■□□□ 1.41
CLRN1P58418 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLRN1P58418 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CLRN1P58418 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLRN1P58418 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLRN1P58418 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLRN1P58418 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.84■■□□□ 1.41
CLRN1P58418 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CLRN1P58418 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CLRN1P58418 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CLRN1P58418 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CLRN1P58418 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC23.8■■□□□ 1.4
CLRN1P58418 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CLRN1P58418 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLRN1P58418 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLRN1P58418 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLRN1P58418 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CLRN1P58418 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
CLRN1P58418 AC097358.2-201ENST00000607541 1159 ntBASIC23.77■■□□□ 1.4
CLRN1P58418 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC23.77■■□□□ 1.4
CLRN1P58418 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CLRN1P58418 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CLRN1P58418 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CLRN1P58418 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CLRN1P58418 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CLRN1P58418 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CLRN1P58418 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.73■■□□□ 1.39
CLRN1P58418 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
CLRN1P58418 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CLRN1P58418 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.73■■□□□ 1.39
CLRN1P58418 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
CLRN1P58418 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLRN1P58418 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.72■■□□□ 1.39
CLRN1P58418 AC136428.2-201ENST00000563187 214 ntBASIC23.72■■□□□ 1.39
CLRN1P58418 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CLRN1P58418 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms