Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 ABHD17AP4-201ENST00000411545 909 ntBASIC26.45■■□□□ 1.82
PDX1P52945 AC005559.1-201ENST00000589661 871 ntBASIC26.45■■□□□ 1.82
PDX1P52945 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.44■■□□□ 1.82
PDX1P52945 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PDX1P52945 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.43■■□□□ 1.82
PDX1P52945 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PDX1P52945 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.42■■□□□ 1.82
PDX1P52945 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
PDX1P52945 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.42■■□□□ 1.82
PDX1P52945 AC044849.2-201ENST00000606596 710 ntBASIC26.41■■□□□ 1.82
PDX1P52945 MIR7108-201ENST00000614319 87 ntBASIC26.41■■□□□ 1.82
PDX1P52945 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.82
PDX1P52945 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.38■■□□□ 1.81
PDX1P52945 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.38■■□□□ 1.81
PDX1P52945 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.37■■□□□ 1.81
PDX1P52945 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
PDX1P52945 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PDX1P52945 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.36■■□□□ 1.81
PDX1P52945 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
PDX1P52945 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
PDX1P52945 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PDX1P52945 WASH5P-204ENST00000632292 975 ntBASIC26.34■■□□□ 1.81
PDX1P52945 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PDX1P52945 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
PDX1P52945 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PDX1P52945 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.28■■□□□ 1.8
PDX1P52945 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
PDX1P52945 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
PDX1P52945 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.26■■□□□ 1.79
PDX1P52945 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
PDX1P52945 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.25■■□□□ 1.79
PDX1P52945 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PDX1P52945 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PDX1P52945 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PDX1P52945 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.23■■□□□ 1.79
PDX1P52945 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
PDX1P52945 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.23■■□□□ 1.79
PDX1P52945 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PDX1P52945 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PDX1P52945 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PDX1P52945 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PDX1P52945 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
PDX1P52945 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.2■■□□□ 1.78
PDX1P52945 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PDX1P52945 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.18■■□□□ 1.78
PDX1P52945 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.18■■□□□ 1.78
PDX1P52945 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.18■■□□□ 1.78
PDX1P52945 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PDX1P52945 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.17■■□□□ 1.78
PDX1P52945 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PDX1P52945 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
PDX1P52945 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.15■■□□□ 1.78
PDX1P52945 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PDX1P52945 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
PDX1P52945 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.15■■□□□ 1.78
PDX1P52945 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.14■■□□□ 1.77
PDX1P52945 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PDX1P52945 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PDX1P52945 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PDX1P52945 ZNRF2P2-203ENST00000454624 420 ntBASIC26.13■■□□□ 1.77
PDX1P52945 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDX1P52945 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDX1P52945 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDX1P52945 HLA-V-202ENST00000446817 847 ntBASIC26.11■■□□□ 1.77
PDX1P52945 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PDX1P52945 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.1■■□□□ 1.77
PDX1P52945 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.1■■□□□ 1.77
PDX1P52945 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PDX1P52945 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.09■■□□□ 1.77
PDX1P52945 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.09■■□□□ 1.77
PDX1P52945 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PDX1P52945 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.09■■□□□ 1.77
PDX1P52945 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.08■■□□□ 1.77
PDX1P52945 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
PDX1P52945 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PDX1P52945 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
PDX1P52945 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PDX1P52945 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.07■■□□□ 1.76
PDX1P52945 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PDX1P52945 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PDX1P52945 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PDX1P52945 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.05■■□□□ 1.76
PDX1P52945 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.05■■□□□ 1.76
PDX1P52945 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PDX1P52945 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.05■■□□□ 1.76
PDX1P52945 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PDX1P52945 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PDX1P52945 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.03■■□□□ 1.76
PDX1P52945 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.03■■□□□ 1.76
PDX1P52945 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PDX1P52945 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PDX1P52945 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.02■■□□□ 1.76
PDX1P52945 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PDX1P52945 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.02■■□□□ 1.76
PDX1P52945 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PDX1P52945 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PDX1P52945 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
PDX1P52945 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.01■■□□□ 1.75
PDX1P52945 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26■■□□□ 1.75
PDX1P52945 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms