Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
ERCC3P19447 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
ERCC3P19447 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
ERCC3P19447 WASH5P-204ENST00000632292 975 ntBASIC31.55■■■□□ 2.64
ERCC3P19447 MIR7108-201ENST00000614319 87 ntBASIC31.54■■■□□ 2.64
ERCC3P19447 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
ERCC3P19447 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
ERCC3P19447 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.52■■■□□ 2.64
ERCC3P19447 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.52■■■□□ 2.64
ERCC3P19447 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.51■■■□□ 2.64
ERCC3P19447 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
ERCC3P19447 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
ERCC3P19447 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
ERCC3P19447 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
ERCC3P19447 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
ERCC3P19447 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
ERCC3P19447 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
ERCC3P19447 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
ERCC3P19447 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
ERCC3P19447 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
ERCC3P19447 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
ERCC3P19447 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
ERCC3P19447 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.4■■■□□ 2.62
ERCC3P19447 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.39■■■□□ 2.62
ERCC3P19447 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
ERCC3P19447 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.39■■■□□ 2.62
ERCC3P19447 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
ERCC3P19447 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.37■■■□□ 2.61
ERCC3P19447 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
ERCC3P19447 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
ERCC3P19447 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.35■■■□□ 2.61
ERCC3P19447 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
ERCC3P19447 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.34■■■□□ 2.61
ERCC3P19447 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
ERCC3P19447 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
ERCC3P19447 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.33■■■□□ 2.61
ERCC3P19447 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
ERCC3P19447 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
ERCC3P19447 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.31■■■□□ 2.6
ERCC3P19447 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.31■■■□□ 2.6
ERCC3P19447 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
ERCC3P19447 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.29■■■□□ 2.6
ERCC3P19447 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.29■■■□□ 2.6
ERCC3P19447 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.29■■■□□ 2.6
ERCC3P19447 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
ERCC3P19447 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.28■■■□□ 2.6
ERCC3P19447 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
ERCC3P19447 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.27■■■□□ 2.6
ERCC3P19447 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.26■■■□□ 2.59
ERCC3P19447 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
ERCC3P19447 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
ERCC3P19447 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
ERCC3P19447 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
ERCC3P19447 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
ERCC3P19447 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
ERCC3P19447 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
ERCC3P19447 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
ERCC3P19447 ZNRF2P2-203ENST00000454624 420 ntBASIC31.23■■■□□ 2.59
ERCC3P19447 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
ERCC3P19447 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
ERCC3P19447 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
ERCC3P19447 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
ERCC3P19447 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
ERCC3P19447 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.21■■■□□ 2.59
ERCC3P19447 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.2■■■□□ 2.59
ERCC3P19447 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
ERCC3P19447 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.18■■■□□ 2.58
ERCC3P19447 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.18■■■□□ 2.58
ERCC3P19447 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.18■■■□□ 2.58
ERCC3P19447 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.17■■■□□ 2.58
ERCC3P19447 HLA-V-202ENST00000446817 847 ntBASIC31.17■■■□□ 2.58
ERCC3P19447 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
ERCC3P19447 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
ERCC3P19447 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.16■■■□□ 2.58
ERCC3P19447 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
ERCC3P19447 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
ERCC3P19447 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
ERCC3P19447 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
ERCC3P19447 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
ERCC3P19447 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
ERCC3P19447 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.13■■■□□ 2.57
ERCC3P19447 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
ERCC3P19447 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
ERCC3P19447 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.11■■■□□ 2.57
ERCC3P19447 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.11■■■□□ 2.57
ERCC3P19447 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
ERCC3P19447 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
ERCC3P19447 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.09■■■□□ 2.57
ERCC3P19447 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
ERCC3P19447 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
ERCC3P19447 DUX4L29-201ENST00000425409 679 ntBASIC31.06■■■□□ 2.56
ERCC3P19447 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.06■■■□□ 2.56
ERCC3P19447 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.05■■■□□ 2.56
ERCC3P19447 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
ERCC3P19447 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.02■■■□□ 2.56
ERCC3P19447 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.01■■■□□ 2.55
ERCC3P19447 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
ERCC3P19447 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31■■■□□ 2.55
ERCC3P19447 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.99■■■□□ 2.55
ERCC3P19447 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.99■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms