Protein–RNA interactions for Protein: P10720

PF4V1, Platelet factor 4 variant, humanhuman

Predictions only

Length 104 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PF4V1P10720 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PF4V1P10720 AP006261.1-201ENST00000584783 668 ntBASIC21.42■■□□□ 1.02
PF4V1P10720 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
PF4V1P10720 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PF4V1P10720 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PF4V1P10720 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.4■■□□□ 1.02
PF4V1P10720 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.38■■□□□ 1.01
PF4V1P10720 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.37■■□□□ 1.01
PF4V1P10720 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PF4V1P10720 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PF4V1P10720 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.37■■□□□ 1.01
PF4V1P10720 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.36■■□□□ 1.01
PF4V1P10720 AL162393.1-201ENST00000437852 946 ntBASIC21.36■■□□□ 1.01
PF4V1P10720 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PF4V1P10720 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.34■■□□□ 1.01
PF4V1P10720 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PF4V1P10720 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PF4V1P10720 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PF4V1P10720 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.32■■□□□ 1
PF4V1P10720 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.31■■□□□ 1
PF4V1P10720 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.31■■□□□ 1
PF4V1P10720 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.31■■□□□ 1
PF4V1P10720 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PF4V1P10720 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
PF4V1P10720 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.29■■□□□ 1
PF4V1P10720 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PF4V1P10720 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
PF4V1P10720 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PF4V1P10720 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PF4V1P10720 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PF4V1P10720 AC120057.4-201ENST00000624722 1615 ntBASIC21.28■■□□□ 1
PF4V1P10720 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.28■■□□□ 1
PF4V1P10720 MIR3665-201ENST00000578708 105 ntBASIC21.27■■□□□ 1
PF4V1P10720 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PF4V1P10720 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.26■□□□□ 0.99
PF4V1P10720 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.26■□□□□ 0.99
PF4V1P10720 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PF4V1P10720 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PF4V1P10720 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.24■□□□□ 0.99
PF4V1P10720 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.24■□□□□ 0.99
PF4V1P10720 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.24■□□□□ 0.99
PF4V1P10720 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.23■□□□□ 0.99
PF4V1P10720 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.23■□□□□ 0.99
PF4V1P10720 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PF4V1P10720 WASH5P-204ENST00000632292 975 ntBASIC21.23■□□□□ 0.99
PF4V1P10720 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PF4V1P10720 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PF4V1P10720 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PF4V1P10720 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PF4V1P10720 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PF4V1P10720 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PF4V1P10720 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.19■□□□□ 0.98
PF4V1P10720 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PF4V1P10720 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PF4V1P10720 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PF4V1P10720 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PF4V1P10720 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.18■□□□□ 0.98
PF4V1P10720 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.18■□□□□ 0.98
PF4V1P10720 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.18■□□□□ 0.98
PF4V1P10720 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC21.18■□□□□ 0.98
PF4V1P10720 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.17■□□□□ 0.98
PF4V1P10720 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PF4V1P10720 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PF4V1P10720 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PF4V1P10720 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PF4V1P10720 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PF4V1P10720 MIR762-201ENST00000390236 83 ntBASIC21.15■□□□□ 0.98
PF4V1P10720 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.15■□□□□ 0.98
PF4V1P10720 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PF4V1P10720 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PF4V1P10720 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
PF4V1P10720 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PF4V1P10720 AC005559.1-201ENST00000589661 871 ntBASIC21.14■□□□□ 0.97
PF4V1P10720 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PF4V1P10720 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PF4V1P10720 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PF4V1P10720 AC044849.2-201ENST00000606596 710 ntBASIC21.11■□□□□ 0.97
PF4V1P10720 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
PF4V1P10720 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PF4V1P10720 DUX4L28-201ENST00000623687 678 ntBASIC21.1■□□□□ 0.97
PF4V1P10720 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PF4V1P10720 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.09■□□□□ 0.97
PF4V1P10720 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PF4V1P10720 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PF4V1P10720 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.08■□□□□ 0.97
PF4V1P10720 AC087741.3-201ENST00000624270 1347 ntBASIC21.07■□□□□ 0.96
PF4V1P10720 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
PF4V1P10720 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PF4V1P10720 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PF4V1P10720 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PF4V1P10720 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PF4V1P10720 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.05■□□□□ 0.96
PF4V1P10720 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PF4V1P10720 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
PF4V1P10720 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PF4V1P10720 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.02■□□□□ 0.96
PF4V1P10720 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.02■□□□□ 0.96
PF4V1P10720 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PF4V1P10720 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PF4V1P10720 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms