Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
TRIM13O60858 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.74■■□□□ 1.87
TRIM13O60858 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.74■■□□□ 1.87
TRIM13O60858 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
TRIM13O60858 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
TRIM13O60858 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.72■■□□□ 1.87
TRIM13O60858 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM13O60858 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM13O60858 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.87
TRIM13O60858 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
TRIM13O60858 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.7■■□□□ 1.86
TRIM13O60858 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.7■■□□□ 1.86
TRIM13O60858 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
TRIM13O60858 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
TRIM13O60858 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
TRIM13O60858 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
TRIM13O60858 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
TRIM13O60858 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
TRIM13O60858 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
TRIM13O60858 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
TRIM13O60858 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM13O60858 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
TRIM13O60858 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
TRIM13O60858 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TRIM13O60858 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.63■■□□□ 1.85
TRIM13O60858 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM13O60858 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM13O60858 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TRIM13O60858 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TRIM13O60858 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
TRIM13O60858 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
TRIM13O60858 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRIM13O60858 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
TRIM13O60858 DYNLL1-208ENST00000550178 581 ntBASIC26.56■■□□□ 1.84
TRIM13O60858 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
TRIM13O60858 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM13O60858 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.55■■□□□ 1.84
TRIM13O60858 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM13O60858 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM13O60858 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.54■■□□□ 1.84
TRIM13O60858 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM13O60858 AC139426.1-201ENST00000568218 2529 ntBASIC26.53■■□□□ 1.84
TRIM13O60858 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
TRIM13O60858 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.51■■□□□ 1.83
TRIM13O60858 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM13O60858 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM13O60858 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM13O60858 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM13O60858 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.5■■□□□ 1.83
TRIM13O60858 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
TRIM13O60858 AL161658.1-201ENST00000623641 1967 ntBASIC26.49■■□□□ 1.83
TRIM13O60858 ST7-AS1-201ENST00000456775 1889 ntBASIC26.49■■□□□ 1.83
TRIM13O60858 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM13O60858 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM13O60858 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.47■■□□□ 1.83
TRIM13O60858 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TRIM13O60858 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
TRIM13O60858 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
TRIM13O60858 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM13O60858 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
TRIM13O60858 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TRIM13O60858 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.42■■□□□ 1.82
TRIM13O60858 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TRIM13O60858 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.41■■□□□ 1.82
TRIM13O60858 AL031258.1-201ENST00000623562 325 ntBASIC26.41■■□□□ 1.82
TRIM13O60858 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
TRIM13O60858 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
TRIM13O60858 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
TRIM13O60858 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
TRIM13O60858 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TRIM13O60858 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
TRIM13O60858 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.37■■□□□ 1.81
TRIM13O60858 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
TRIM13O60858 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TRIM13O60858 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
TRIM13O60858 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.34■■□□□ 1.81
TRIM13O60858 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TRIM13O60858 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM13O60858 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.33■■□□□ 1.81
TRIM13O60858 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM13O60858 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM13O60858 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM13O60858 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM13O60858 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM13O60858 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM13O60858 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM13O60858 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM13O60858 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM13O60858 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
TRIM13O60858 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.28■■□□□ 1.8
TRIM13O60858 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRIM13O60858 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRIM13O60858 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
TRIM13O60858 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM13O60858 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM13O60858 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.26■■□□□ 1.79
TRIM13O60858 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM13O60858 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
TRIM13O60858 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TRIM13O60858 AL135925.1-201ENST00000605920 1701 ntBASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms