Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.26■□□□□ 0.99
CDH3P22223 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CDH3P22223 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH3P22223 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CDH3P22223 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.26■□□□□ 0.99
CDH3P22223 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CDH3P22223 AL117328.2-201ENST00000624617 1940 ntBASIC21.25■□□□□ 0.99
CDH3P22223 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDH3P22223 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CDH3P22223 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.25■□□□□ 0.99
CDH3P22223 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.25■□□□□ 0.99
CDH3P22223 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CDH3P22223 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.25■□□□□ 0.99
CDH3P22223 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH3P22223 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.24■□□□□ 0.99
CDH3P22223 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CDH3P22223 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CDH3P22223 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.24■□□□□ 0.99
CDH3P22223 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.24■□□□□ 0.99
CDH3P22223 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDH3P22223 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
CDH3P22223 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH3P22223 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH3P22223 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CDH3P22223 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH3P22223 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.23■□□□□ 0.99
CDH3P22223 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDH3P22223 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CDH3P22223 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CDH3P22223 IGHV3-19-201ENST00000521488 291 ntBASIC21.23■□□□□ 0.99
CDH3P22223 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CDH3P22223 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH3P22223 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
CDH3P22223 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 LINC00565-201ENST00000562710 2331 ntBASIC21.23■□□□□ 0.99
CDH3P22223 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.23■□□□□ 0.99
CDH3P22223 AC092068.2-201ENST00000590491 1708 ntBASIC21.23■□□□□ 0.99
CDH3P22223 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH3P22223 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH3P22223 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
CDH3P22223 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH3P22223 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.22■□□□□ 0.99
CDH3P22223 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CDH3P22223 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH3P22223 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.22■□□□□ 0.99
CDH3P22223 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.22■□□□□ 0.99
CDH3P22223 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CDH3P22223 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH3P22223 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CDH3P22223 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.22■□□□□ 0.99
CDH3P22223 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.21■□□□□ 0.99
CDH3P22223 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH3P22223 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.21■□□□□ 0.99
CDH3P22223 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH3P22223 RARRES2P6-201ENST00000567333 442 ntBASIC21.21■□□□□ 0.99
CDH3P22223 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CDH3P22223 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.21■□□□□ 0.99
CDH3P22223 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH3P22223 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH3P22223 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
CDH3P22223 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDH3P22223 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH3P22223 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CDH3P22223 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.2■□□□□ 0.98
CDH3P22223 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.2■□□□□ 0.98
CDH3P22223 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.2■□□□□ 0.98
CDH3P22223 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.2■□□□□ 0.98
CDH3P22223 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH3P22223 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CDH3P22223 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.19■□□□□ 0.98
CDH3P22223 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms