Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.95■■□□□ 1.1
SHOX2O60902 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
SHOX2O60902 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
SHOX2O60902 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.94■■□□□ 1.1
SHOX2O60902 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHOX2O60902 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHOX2O60902 RP9P-202ENST00000450133 1212 ntBASIC21.94■■□□□ 1.1
SHOX2O60902 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.94■■□□□ 1.1
SHOX2O60902 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.94■■□□□ 1.1
SHOX2O60902 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHOX2O60902 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHOX2O60902 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
SHOX2O60902 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
SHOX2O60902 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SHOX2O60902 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHOX2O60902 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SHOX2O60902 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.93■■□□□ 1.1
SHOX2O60902 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
SHOX2O60902 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHOX2O60902 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.92■■□□□ 1.1
SHOX2O60902 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SHOX2O60902 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SHOX2O60902 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 AC144652.1-201ENST00000609974 1624 ntBASIC21.92■■□□□ 1.1
SHOX2O60902 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.92■■□□□ 1.1
SHOX2O60902 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.92■■□□□ 1.1
SHOX2O60902 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
SHOX2O60902 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHOX2O60902 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
SHOX2O60902 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.91■■□□□ 1.1
SHOX2O60902 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.91■■□□□ 1.1
SHOX2O60902 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
SHOX2O60902 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
SHOX2O60902 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.91■■□□□ 1.1
SHOX2O60902 AC060814.1-201ENST00000554326 538 ntBASIC21.91■■□□□ 1.1
SHOX2O60902 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHOX2O60902 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SHOX2O60902 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.91■■□□□ 1.1
SHOX2O60902 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SHOX2O60902 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
SHOX2O60902 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SHOX2O60902 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 AC093536.1-201ENST00000569153 554 ntBASIC21.9■■□□□ 1.1
SHOX2O60902 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
SHOX2O60902 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHOX2O60902 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.9■■□□□ 1.1
SHOX2O60902 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SHOX2O60902 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.89■■□□□ 1.1
SHOX2O60902 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SHOX2O60902 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHOX2O60902 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SHOX2O60902 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHOX2O60902 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
SHOX2O60902 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.89■■□□□ 1.09
SHOX2O60902 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.89■■□□□ 1.09
SHOX2O60902 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SHOX2O60902 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
SHOX2O60902 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.89■■□□□ 1.09
SHOX2O60902 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
SHOX2O60902 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SHOX2O60902 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SHOX2O60902 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.88■■□□□ 1.09
SHOX2O60902 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHOX2O60902 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHOX2O60902 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHOX2O60902 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHOX2O60902 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHOX2O60902 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHOX2O60902 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHOX2O60902 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.87■■□□□ 1.09
SHOX2O60902 PKD1P6-201ENST00000343738 4769 ntBASIC21.87■■□□□ 1.09
SHOX2O60902 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms