RNA–Protein interactions for RNA: ENST00000373484.4

SYNC-201, Transcript of syncoilin, intermediate filament protein, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNC, Length 1,824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNC-201ENST00000373484 NISCHQ9Y2I1 1504 aa48.71■■■■■ 5.39
SYNC-201ENST00000373484 CCDC180Q9P1Z9 1646 aa43.26■■■■■ 4.51
SYNC-201ENST00000373484 ABCC9O60706 1549 aa41.93■■■■■ 4.3
SYNC-201ENST00000373484 ZCCHC6Q5VYS8 1495 aaKnown RBP40.65■■■■■ 4.1
SYNC-201ENST00000373484 NACADO15069 1562 aa40.54■■■■■ 4.08
SYNC-201ENST00000373484 RB1CC1Q8TDY2 1594 aa40.52■■■■■ 4.08
SYNC-201ENST00000373484 DCAF8L2P0C7V8 631 aa40.46■■■■■ 4.07
SYNC-201ENST00000373484 MYO15BQ96JP2 1530 aa40.4■■■■■ 4.06
SYNC-201ENST00000373484 DCAF1Q9Y4B6 1507 aa40.35■■■■■ 4.05
SYNC-201ENST00000373484 UNC13AQ9UPW8 1703 aa39.72■■■■□ 3.95
SYNC-201ENST00000373484 SCRIBQ14160 1630 aa39.43■■■■□ 3.9
SYNC-201ENST00000373484 BICRAQ9NZM4 1560 aa39.3■■■■□ 3.88
SYNC-201ENST00000373484 PABPN1Q86U42 306 aaKnown RBP eCLIP39.18■■■■□ 3.86
SYNC-201ENST00000373484 SHROOM4Q9ULL8 1493 aa38.9■■■■□ 3.82
SYNC-201ENST00000373484 EIF4G1Q04637 1599 aaKnown RBP38.22■■■■□ 3.71
SYNC-201ENST00000373484 DNAJC5BQ9UF47 199 aa38.19■■■■□ 3.7
SYNC-201ENST00000373484 CC2D2AQ9P2K1 1620 aa38■■■■□ 3.67
SYNC-201ENST00000373484 CECR2Q9BXF3 1484 aa37.89■■■■□ 3.66
SYNC-201ENST00000373484 SMARCA4P51532 1647 aa37.77■■■■□ 3.64
SYNC-201ENST00000373484 BAZ1AQ9NRL2 1556 aaPredicted RBP37.75■■■■□ 3.63
SYNC-201ENST00000373484 MROH2BQ7Z745 1585 aa37.55■■■■□ 3.6
SYNC-201ENST00000373484 ATAD2BQ9ULI0 1458 aa37.44■■■■□ 3.58
SYNC-201ENST00000373484 SMARCA2P51531 1590 aa37.43■■■■□ 3.58
SYNC-201ENST00000373484 PEG3Q9GZU2 1588 aa37.41■■■■□ 3.58
SYNC-201ENST00000373484 NCAPD3P42695 1498 aa37.38■■■■□ 3.57
SYNC-201ENST00000373484 HMGXB3Q12766 1538 aa37.26■■■■□ 3.56
SYNC-201ENST00000373484 RSF1Q96T23 1441 aaPredicted RBP37.2■■■■□ 3.55
SYNC-201ENST00000373484 WIZO95785 1651 aa37.2■■■■□ 3.55
SYNC-201ENST00000373484 BAZ1BQ9UIG0 1483 aaKnown RBP37.15■■■■□ 3.54
SYNC-201ENST00000373484 TOP2AP11388 1531 aaKnown RBP36.79■■■■□ 3.48
SYNC-201ENST00000373484 SUPT5HO00267 1087 aaKnown RBP36.41■■■■□ 3.42
SYNC-201ENST00000373484 NESP48681 1621 aa36.39■■■■□ 3.42
SYNC-201ENST00000373484 LAMC3Q9Y6N6 1575 aa36.38■■■■□ 3.41
SYNC-201ENST00000373484 CCDC88BA6NC98 1476 aa36.33■■■■□ 3.41
SYNC-201ENST00000373484 CADPSQ9ULU8 1353 aa36.28■■■■□ 3.4
SYNC-201ENST00000373484 CFTRP13569 1480 aa36.16■■■■□ 3.38
SYNC-201ENST00000373484 ERCC6Q03468 1493 aa36.11■■■■□ 3.37
SYNC-201ENST00000373484 PDS5BQ9NTI5 1447 aa36.07■■■■□ 3.36
SYNC-201ENST00000373484 KIF21AQ7Z4S6 1674 aa36.06■■■■□ 3.36
SYNC-201ENST00000373484 PRDM2Q13029 1718 aa36.05■■■■□ 3.36
SYNC-201ENST00000373484 FANCD2Q9BXW9 1451 aa35.88■■■■□ 3.33
SYNC-201ENST00000373484 THOC2Q8NI27 1593 aaKnown RBP35.84■■■■□ 3.33
SYNC-201ENST00000373484 CEP164Q9UPV0 1460 aa35.82■■■■□ 3.32
SYNC-201ENST00000373484 MRC2Q9UBG0 1479 aa35.7■■■■□ 3.31
SYNC-201ENST00000373484 CUX2O14529 1486 aa35.65■■■■□ 3.3
SYNC-201ENST00000373484 WDR62O43379 1518 aa35.61■■■■□ 3.29
SYNC-201ENST00000373484 URB2Q14146 1524 aaKnown RBP35.52■■■■□ 3.28
SYNC-201ENST00000373484 ABCC8Q09428 1581 aa35.36■■■■□ 3.25
SYNC-201ENST00000373484 DNMBPQ6XZF7 1577 aa35.36■■■■□ 3.25
SYNC-201ENST00000373484 TOPBP1Q92547 1522 aa35.36■■■■□ 3.25
SYNC-201ENST00000373484 CUX1P39880 1505 aa35.21■■■■□ 3.23
SYNC-201ENST00000373484 POLA1P09884 1462 aaPredicted RBP35.07■■■■□ 3.21
SYNC-201ENST00000373484 WRNQ14191 1432 aaPredicted RBP eCLIP35.06■■■■□ 3.2
SYNC-201ENST00000373484 IFT140Q96RY7 1462 aa35.04■■■■□ 3.2
SYNC-201ENST00000373484 BIVM-ERCC5R4GMW8 1640 aa35.03■■■■□ 3.2
SYNC-201ENST00000373484 FGD5Q6ZNL6 1462 aa35.03■■■■□ 3.2
SYNC-201ENST00000373484 TOP2BQ02880 1626 aa35.02■■■■□ 3.2
SYNC-201ENST00000373484 SYNJ1O43426 1573 aa35.01■■■■□ 3.2
SYNC-201ENST00000373484 TARBP1Q13395 1621 aaKnown RBP34.99■■■■□ 3.19
SYNC-201ENST00000373484 RAD54L2Q9Y4B4 1467 aa34.9■■■■□ 3.18
SYNC-201ENST00000373484 SOGA1O94964 1423 aa34.9■■■■□ 3.18
SYNC-201ENST00000373484 ZNF608Q9ULD9 1512 aaPredicted RBP34.87■■■■□ 3.17
SYNC-201ENST00000373484 WDR97A6NE52 1622 aa34.82■■■■□ 3.17
SYNC-201ENST00000373484 EIF4G3O43432 1585 aaKnown RBP34.79■■■■□ 3.16
SYNC-201ENST00000373484 ABCA10Q8WWZ4 1543 aa34.72■■■■□ 3.15
SYNC-201ENST00000373484 AQRO60306 1485 aaKnown RBP eCLIP34.69■■■■□ 3.14
SYNC-201ENST00000373484 TDRD9Q8NDG6 1382 aaKnown RBP34.66■■■■□ 3.14
SYNC-201ENST00000373484 ABCA5Q8WWZ7 1642 aa34.59■■■■□ 3.13
SYNC-201ENST00000373484 PBRM1Q86U86 1689 aa34.53■■■■□ 3.12
SYNC-201ENST00000373484 GAPVD1Q14C86 1478 aa34.53■■■■□ 3.12
SYNC-201ENST00000373484 GRIN2BQ13224 1484 aa34.48■■■■□ 3.11
SYNC-201ENST00000373484 SNAPC4Q5SXM2 1469 aa34.4■■■■□ 3.1
SYNC-201ENST00000373484 TRIM41Q8WV44 630 aa34.39■■■■□ 3.1
SYNC-201ENST00000373484 MAGI1Q96QZ7 1491 aaPredicted RBP34.37■■■■□ 3.09
SYNC-201ENST00000373484 CHD1O14646 1710 aa34.33■■■■□ 3.09
SYNC-201ENST00000373484 ERICH3Q5RHP9 1530 aa34.32■■■■□ 3.08
SYNC-201ENST00000373484 KIF27Q86VH2 1401 aa34.3■■■■□ 3.08
SYNC-201ENST00000373484 SYNJ2O15056 1496 aa34.23■■■■□ 3.07
SYNC-201ENST00000373484 ADAMTS12P58397 1594 aa34.23■■■■□ 3.07
SYNC-201ENST00000373484 CHIC1Q5VXU3 224 aa34.18■■■■□ 3.06
SYNC-201ENST00000373484 OSCARQ8IYS5 282 aa34.16■■■■□ 3.06
SYNC-201ENST00000373484 FBLN2P98095 1184 aa34.16■■■■□ 3.06
SYNC-201ENST00000373484 DNAJC5Q9H3Z4 198 aa34.16■■■■□ 3.06
SYNC-201ENST00000373484 CHMP7Q8WUX9 453 aaPredicted RBP34.13■■■■□ 3.05
SYNC-201ENST00000373484 FHAD1B1AJZ9 1412 aa34.12■■■■□ 3.05
SYNC-201ENST00000373484 IGF1RP08069 1367 aa34.11■■■■□ 3.05
SYNC-201ENST00000373484 RUSC2Q8N2Y8 1516 aa34.1■■■■□ 3.05
SYNC-201ENST00000373484 CUL7Q14999 1698 aa34.1■■■■□ 3.05
SYNC-201ENST00000373484 GRIN2AQ12879 1464 aa34.05■■■■□ 3.04
SYNC-201ENST00000373484 CLASP1Q7Z460 1538 aa33.92■■■■□ 3.02
SYNC-201ENST00000373484 CARMIL1Q5VZK9 1371 aa33.92■■■■□ 3.02
SYNC-201ENST00000373484 CEP170Q5SW79 1584 aa33.89■■■■□ 3.02
SYNC-201ENST00000373484 NUP160Q12769 1436 aa33.89■■■■□ 3.02
SYNC-201ENST00000373484 EEA1Q15075 1411 aa33.85■■■■□ 3.01
SYNC-201ENST00000373484 RAPGEF2Q9Y4G8 1499 aa33.78■■■■□ 3
SYNC-201ENST00000373484 PRXQ9BXM0 1461 aa33.74■■■□□ 2.99
SYNC-201ENST00000373484 CSRNP3Q8WYN3 585 aa33.72■■■□□ 2.99
SYNC-201ENST00000373484 ARHGEF11O15085 1522 aa33.68■■■□□ 2.98
SYNC-201ENST00000373484 RIMBP3CA6NJZ7 1639 aa33.68■■■□□ 2.98
SYNC-201ENST00000373484 RIMBP3BA6NNM3 1639 aa33.68■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms